GraFix: sample preparation for single-particle electron cryomicroscopy

被引:392
作者
Kastner, Berthold [1 ]
Fischer, Niels [2 ]
Golas, Monika Mariola [2 ]
Sander, Bjoern [2 ]
Dube, Prakash [2 ]
Boehringer, Daniel [2 ]
Hartmuth, Klaus [1 ]
Deckert, Jochen [1 ]
Hauer, Florian [2 ]
Wolf, Elmar [1 ]
Uchtenhagen, Hannes [2 ]
Urlaub, Henning [3 ]
Herzog, Franz [5 ]
Peters, Jan Michael [5 ]
Poerschke, Dietmar [4 ]
Hrmann, Reinhard Lu [1 ]
Stark, Holger [2 ]
机构
[1] Max Planck Inst Biophys Chem, Dept Cellular Biochem, D-37077 Gottingen, Germany
[2] Max Planck Inst Biophys Chem, Electron Cryomicroscopy Grp 3D, D-37077 Gottingen, Germany
[3] Max Planck Inst Biophys Chem, Mass Spectrometry Grp, D-37077 Gottingen, Germany
[4] Max Planck Inst Biophys Chem, Biomol Dynam Grp, D-37077 Gottingen, Germany
[5] Res Inst Mol Pathol, A-1030 Vienna, Austria
关键词
D O I
10.1038/NMETH1139
中图分类号
Q5 [生物化学];
学科分类号
071010 ; 081704 ;
摘要
We developed a method, named GraFix, that considerably improves sample quality for structure determination by single-particle electron cryomicroscopy (cryo-EM). GraFix uses a glycerol gradient centrifugation step in which the complexes are centrifuged into an increasing concentration of a chemical fixation reagent to prevent aggregation and to stabilize individual macromolecules. The method can be used to prepare samples for negative-stain, cryo-negative-stain and, particularly, unstained cryo-EM.
引用
收藏
页码:53 / 55
页数:3
相关论文
共 15 条
  • [1] Structural basis for mRNA and tRNA positioning on the ribosome
    Berk, Veysel
    Zhang, Wen
    Pai, Raj D.
    Cate, Jamie H. Doudna
    [J]. PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA, 2006, 103 (43) : 15830 - 15834
  • [2] Three-dimensional structure of a pre-catalytic human spliceosomal complex B
    Boehringer, D
    Makarov, EM
    Sander, B
    Makarova, OV
    Kastner, B
    Lührmann, R
    Stark, H
    [J]. NATURE STRUCTURAL & MOLECULAR BIOLOGY, 2004, 11 (05) : 463 - 468
  • [3] Electron cryomicroscopy of biological machines at subnanometer resolution
    Chiu, W
    Baker, ML
    Jiang, W
    Dougherty, M
    Schmid, MF
    [J]. STRUCTURE, 2005, 13 (03) : 363 - 372
  • [4] Localization of the coactivator Cdh1 and the cullin subunit Apc2 in a cryo-electron microscopy model of vertebrate APC/C
    Dube, P
    Herzog, F
    Gieffers, C
    Sander, B
    Riedel, D
    Müller, SA
    Engel, A
    Peters, JM
    Stark, H
    [J]. MOLECULAR CELL, 2005, 20 (06) : 867 - 879
  • [5] Proteome survey reveals modularity of the yeast cell machinery
    Gavin, AC
    Aloy, P
    Grandi, P
    Krause, R
    Boesche, M
    Marzioch, M
    Rau, C
    Jensen, LJ
    Bastuck, S
    Dümpelfeld, B
    Edelmann, A
    Heurtier, MA
    Hoffman, V
    Hoefert, C
    Klein, K
    Hudak, M
    Michon, AM
    Schelder, M
    Schirle, M
    Remor, M
    Rudi, T
    Hooper, S
    Bauer, A
    Bouwmeester, T
    Casari, G
    Drewes, G
    Neubauer, G
    Rick, JM
    Kuster, B
    Bork, P
    Russell, RB
    Superti-Furga, G
    [J]. NATURE, 2006, 440 (7084) : 631 - 636
  • [6] Molecular architecture of the multiprotein splicing factor SF3b
    Golas, MM
    Sander, B
    Will, CL
    Lührmann, R
    Stark, H
    [J]. SCIENCE, 2003, 300 (5621) : 980 - 984
  • [7] Signal recognition particle receptor exposes the ribosomal translocon binding site
    Halic, M
    Gartmann, M
    Schlenker, O
    Mielke, T
    Pool, MR
    Sinning, I
    Beckmann, R
    [J]. SCIENCE, 2006, 312 (5774) : 745 - 747
  • [8] GLUTARALDEHYDE - ROLE IN ELECTRON-MICROSCOPY
    HAYAT, MA
    [J]. MICRON AND MICROSCOPICA ACTA, 1986, 17 (02): : 115 - 135
  • [9] Post-crystallization treatments for improving diffraction quality of protein crystals
    Heras, B
    Martin, JL
    [J]. ACTA CRYSTALLOGRAPHICA SECTION D-STRUCTURAL BIOLOGY, 2005, 61 : 1173 - 1180
  • [10] A gentle vapor-diffusion technique for cross-linking of protein crystals for cryocrystallography
    Lusty, CJ
    [J]. JOURNAL OF APPLIED CRYSTALLOGRAPHY, 1999, 32 : 106 - 112