Impact of Reactive Oxygen and Nitrogen Species Produced by Plasma on Mdm2-p53 Complex

被引:7
作者
Attri, Pankaj [1 ,2 ]
Kurita, Hirofumi [3 ]
Koga, Kazunori [4 ,5 ]
Shiratani, Masaharu [1 ,4 ]
机构
[1] Kyushu Univ, Ctr Plasma Nanointerface Engn, Fukuoka 8190395, Japan
[2] Kyushu Univ, Grad Sch Informat Sci & Elect Engn, Fukuoka 8190395, Japan
[3] Toyohashi Univ Technol, Dept Appl Chem & Life Sci, Toyohashi, Aichi 4418580, Japan
[4] Kyushu Univ, Fac Informat Sci & Elect Engn, Fukuoka 8190395, Japan
[5] Natl Inst Nat Sci, Ctr Novel Sci Initiat, Tokyo 1050001, Japan
关键词
Mdm2-p53; plasma treatment; molecular dynamic (MD) simulations; MOLECULAR-DYNAMICS; OXIDATIVE STRESS; P53; PROTEIN; INACTIVATION; RESISTANCE; INHIBITORS; SIMULATIONS; ACTIVATION; CISPLATIN;
D O I
10.3390/ijms22179585
中图分类号
Q5 [生物化学]; Q7 [分子生物学];
学科分类号
071010 ; 081704 ;
摘要
The study of protein-protein interactions is of great interest. Several early studies focused on the murine double minute 2 (Mdm2)-tumor suppressor protein p53 interactions. However, the effect of plasma treatment on Mdm2 and p53 is still absent from the literature. This study investigated the structural changes in Mdm2, p53, and the Mdm2-p53 complex before and after possible plasma oxidation through molecular dynamic (MD) simulations. MD calculation revealed that the oxidized Mdm2 bounded or unbounded showed high flexibility that might increase the availability of tumor suppressor protein p53 in plasma-treated cells. This study provides insight into Mdm2 and p53 for a better understanding of plasma oncology.
引用
收藏
页数:14
相关论文
共 75 条
[1]   Gromacs: High performance molecular simulations through multi-level parallelism from laptops to supercomputers [J].
Abraham, Mark James ;
Murtola, Teemu ;
Schulz, Roland ;
Páll, Szilárd ;
Smith, Jeremy C. ;
Hess, Berk ;
Lindah, Erik .
SoftwareX, 2015, 1-2 :19-25
[2]   Breast cancer treatment using cold atmospheric plasma generated by the FE-DBD scheme [J].
Adil, Ban H. ;
Al-Shammari, Ahmed Majeed ;
Murbat, Hamid H. .
CLINICAL PLASMA MEDICINE, 2020, 19-20
[3]   Possible impact of plasma oxidation on the structure of the C-terminal domain of SARS-CoV-2 spike protein: a computational study [J].
Attri, Pankaj ;
Koga, Kazunori ;
Shiratani, Masaharu .
APPLIED PHYSICS EXPRESS, 2021, 14 (02)
[4]   Structural modification of NADPH oxidase activator (Noxa 1) by oxidative stress: An experimental and computational study [J].
Attri, Pankaj ;
Park, Jae-Hyun ;
De Backer, Joey ;
Kim, Myeongkyu ;
Yun, Ji-Hye ;
Heo, Yunseok ;
Dewilde, Sylvia ;
Shiratani, Masaharu ;
Choi, Eun Ha ;
Lee, Weontae ;
Bogaerts, Annemie .
INTERNATIONAL JOURNAL OF BIOLOGICAL MACROMOLECULES, 2020, 163 (163) :2405-2414
[5]   Influence of osmolytes and ionic liquids on the Bacteriorhodopsin structure in the absence and presence of oxidative stress: A combined experimental and computational study [J].
Attri, Pankaj ;
Razzokov, Jamoliddin ;
Yusupov, Maksudbek ;
Koga, Kazunori ;
Shiratani, Masaharu ;
Bogaerts, Annemie .
INTERNATIONAL JOURNAL OF BIOLOGICAL MACROMOLECULES, 2020, 148 :657-665
[6]   CAP modifies the structure of a model protein from thermophilic bacteria: mechanisms of CAP-mediated inactivation [J].
Attri, Pankaj ;
Hang, Jeongmin ;
Choi, Sooho ;
Choi, Eun Ha ;
Bogaerts, Annemie ;
Lee, Weontae .
SCIENTIFIC REPORTS, 2018, 8
[7]   The protective action of osmolytes on the deleterious effects of gamma rays and atmospheric pressure plasma on protein conformational changes [J].
Attri, Pankaj ;
Kim, Minsup ;
Sarinont, Thapanut ;
Choi, Eun Ha ;
Seo, Hyunwoong ;
Cho, Art E. ;
Koga, Kazunori ;
Shiratani, Masaharu .
SCIENTIFIC REPORTS, 2017, 7
[8]   Influence of ionic liquid and ionic salt on protein against the reactive species generated using dielectric barrier discharge plasma [J].
Attri, Pankaj ;
Sarinont, Thapanut ;
Kim, Minsup ;
Amano, Takaaki ;
Koga, Kazunori ;
Cho, Art E. ;
Choi, Eun Ha ;
Shiratani, Masaharu .
SCIENTIFIC REPORTS, 2015, 5
[9]   Influence of reactive species on the modification of biomolecules generated from the soft plasma [J].
Attri, Pankaj ;
Kumar, Naresh ;
Park, Ji Hoon ;
Yadav, Dharmendra Kumar ;
Choi, Sooho ;
Uhm, Han S. ;
Kim, In Tae ;
Choi, Eun Ha ;
Lee, Weontae .
SCIENTIFIC REPORTS, 2015, 5
[10]   Influence of Reactive Oxygen Species on the Enzyme Stability and Activity in the Presence of Ionic Liquids [J].
Attri, Pankaj ;
Choi, Eun Ha .
PLOS ONE, 2013, 8 (09)