Vibrational spectroscopy and mode assignments for an analog of the green fluorescent protein chromophore

被引:38
作者
Esposito, AP
Schellenberg, P
Parson, WW
Reid, PJ
机构
[1] Univ Washington, Dept Chem, Seattle, WA 98195 USA
[2] Univ Washington, Dept Biochem, Seattle, WA 98195 USA
基金
美国国家科学基金会;
关键词
green fluorescent protein; resonance Raman; density functional theory; vibrational spectroscopy;
D O I
10.1016/S0022-2860(00)00825-5
中图分类号
O64 [物理化学(理论化学)、化学物理学];
学科分类号
070304 ; 081704 ;
摘要
Infrared absorption (IR), Raman, and resonance Raman spectra have been obtained from 500 to 1700 cm(-1) for 4-hydroxybenzylidene-2,3-dimethyl-imidazolinone (HBDI), an analog of the green-fluorescent protein (GFP) chromophore. Numerous transitions are evident in both the IR and Raman spectra, with the resonance Raman spectrum of HBDI dominated by a subset of transitions in the 1430-1700 cm(-1) region. Assignment of the transitions in this frequency region to the corresponding normal coordinates is accomplished through computational studies employing density functional and Hartree-Fock theory. The computational results indicate that the vibrational transitions in this frequency range are dominated by in-plane stretching modes that are localized to the imidazolinone or tyrosine portions of the chromophore, rather than being delocalized over the entire chromophore. No evidence is obtained for significant excited-state structural evolution along the O-H stretching coordinate. The implications of these findings with respect to the excited-state proton transfer dynamics of GFP are discussed. (C) 2001 Elsevier Science B.V. All rights reserved.
引用
收藏
页码:25 / 41
页数:17
相关论文
共 50 条
  • [41] Side chain torsion dictates planarity and ionizability of green fluorescent protein's chromophore leading to spectral perturbations
    Raghavan, S. Sriram
    Niraikulam, Ayyadurai
    Gunasekaran, Krishnasamy
    JOURNAL OF BIOMOLECULAR STRUCTURE & DYNAMICS, 2019, 37 (17) : 4450 - 4459
  • [42] Five concomitant polymorphs of a green fluorescent protein chromophore (GFPc) analogue: understanding variations in photoluminescence with π-stacking interactions
    Mali, Bhupendra P.
    Dash, Soumya Ranjan
    Nikam, Shrikant B.
    Puthuvakkal, Anisha
    Vanka, Kumar
    Manoj, Kochunnoonny
    Gonnade, Rajesh G.
    ACTA CRYSTALLOGRAPHICA SECTION B-STRUCTURAL SCIENCE CRYSTAL ENGINEERING AND MATERIALS, 2020, 76 : 850 - 864
  • [43] Ultrafast vibrational dynamics of parallel excited state proton transfer reactions in the Green Fluorescent Protein
    van Thor, Jasper J.
    Lincoln, Craig N.
    Kellner, Brendon
    Bourdakos, Konstantinos N.
    Thompson, Lee M.
    Bearpark, Michael J.
    Champion, Paul M.
    Sage, J. Timothy
    VIBRATIONAL SPECTROSCOPY, 2012, 62 : 1 - 6
  • [44] Elucidating the Role of Hydrogen Bonding in the Optical Spectroscopy of the Solvated Green Fluorescent Protein Chromophore: Using Machine Learning to Establish the Importance of High-Level Electronic Structure
    Chen, Michael S.
    Mao, Yuezhi
    Snider, Andrew
    Gupta, Prachi
    Montoya-Castillo, Andres
    Zuehlsdorff, Tim J.
    Isborn, Christine M.
    Markland, Thomas E.
    JOURNAL OF PHYSICAL CHEMISTRY LETTERS, 2023, 14 (29) : 6610 - 6619
  • [45] The low frequency vibrational modes of green fluorescent proteins
    Tozzini, V
    Bizzarri, AR
    Pellegrini, V
    Nifosì, R
    Giannozzi, P
    Iuliano, A
    Cannistraro, S
    Beltram, F
    CHEMICAL PHYSICS, 2003, 287 (1-2) : 33 - 42
  • [46] Modeling absorption of the kindling fluorescent protein with the neutral form of the chromophore
    Topol, Igor
    Collins, Jack
    Mironov, Vladimir
    Savitsky, Alexander
    Nemukhin, Alexander
    INTERNATIONAL JOURNAL OF QUANTUM CHEMISTRY, 2012, 112 (17) : 2947 - 2951
  • [47] The influence of chromophore-protein interactions on spectroscopic properties of the yellow fluorescent protein
    A. A. Pakhomov
    S. A. Tretyakova
    V. I. Martynov
    Doklady Biochemistry and Biophysics, 2012, 445 : 207 - 209
  • [48] A theoretical investigation of the mechanism of formation of a simplified analog of the green fluorescent protein (GFP) from a peptide model
    Trujillo, Cristina
    Sanchez-Sanz, Goar
    Alkorta, Ibon
    Elguero, Jose
    STRUCTURAL CHEMISTRY, 2013, 24 (04) : 1145 - 1151
  • [49] Reliable use of green fluorescent protein in fluorescent pseudomonads
    Timms-Wilson, TM
    Bailey, MJ
    JOURNAL OF MICROBIOLOGICAL METHODS, 2001, 46 (01) : 77 - 80
  • [50] A theoretical investigation of the mechanism of formation of a simplified analog of the green fluorescent protein (GFP) from a peptide model
    Cristina Trujillo
    Goar Sánchez-Sanz
    Ibon Alkorta
    José Elguero
    Structural Chemistry, 2013, 24 : 1145 - 1151