The ClinGen Epilepsy Gene Curation Expert Panel-Bridging the divide between clinical domain knowledge and formal gene curation criteria

被引:39
作者
Helbig, Ingo [1 ,2 ]
Riggs, Erin Rooney [3 ]
Barry, Carrie-Anne [3 ]
Klein, Karl Martin [4 ,5 ]
Dyment, David [6 ]
Thaxton, Courtney [7 ]
Sadikovic, Bekim [8 ]
Sands, Tristan T. [9 ]
Wagnon, Jacy L. [10 ]
Liaquat, Khalida [11 ]
Cilio, Maria Roberta [12 ,13 ]
Mirzaa, Ghayda [14 ,15 ]
Park, Kristen [16 ]
Axeen, Erika [17 ]
Butler, Elizabeth [18 ]
Bardakjian, Tanya M. [19 ]
Striano, Pasquale [20 ]
Poduri, Annapurna [21 ]
Siegert, Rebecca K. [22 ]
Grant, Andrew R. [22 ]
Helbig, Katherine L. [1 ]
Mefford, Heather C. [23 ]
机构
[1] Childrens Hosp Philadelphia, Div Neurol, 3401 Civ Ctr Blvd, Philadelphia, PA 19104 USA
[2] Christian Albrechts Univ Kiel, Dept Neuropediat, Kiel, Germany
[3] Geisinger Hlth Syst, Autism& Dev Med Inst, Lewisburg, PA USA
[4] Goethe Univ Frankfurt Main, Epilepsy Ctr Frankfurt Rhine Main, Dept Neurol, Frankfurt, Germany
[5] Philipps Univ, Epilepsy Ctr Hessen, Dept Neurol, Marburg, Germany
[6] Univ Ottawa, Childrens Hosp Eastern Ontario, Res Inst, Ottawa, ON, Canada
[7] Univ N Carolina, Dept Genet, Chapel Hill, NC USA
[8] Western Univ Mol Genet Lab, London Hlth Sci, Dept Pathol & Lab Med, London, ON, Canada
[9] Columbia Univ, Med Ctr, Div Child Neurol, New York, NY USA
[10] Univ Michigan, Dept Human Genet, Ann Arbor, MI 48109 USA
[11] Athena Diagnost, Quest Diagnost, Marlborough, MA USA
[12] Univ Calif San Francisco, Dept Pediat, San Francisco, CA 94143 USA
[13] Univ Calif San Francisco, Dept Neurol, San Francisco, CA 94143 USA
[14] Seattle Childrens Res Inst, Ctr Integrat Brain Res, Seattle, WA USA
[15] Univ Washington, Dept Pediat, Seattle, WA 98195 USA
[16] Univ Colorado, Sch Med, Dept Pediat & Neurol, Aurora, CO USA
[17] Univ Virginia, Dept Neurol, Charlottesville, VA USA
[18] GeneDx, Gaithersburg, MD USA
[19] Univ Penn, Dept Neurol, Philadelphia, PA 19104 USA
[20] Univ Genoa, G Gaslini Inst, DINOGMI Dept Neurosci Rehabil Ophthalmol Genet Ma, Pediat Neurol & Muscular Dis Unit, Genoa, Italy
[21] Boston Childrens Hosp, Dept Neurol, Epilepsy Genet Program, Boston, MA USA
[22] Partners Healthcare Personalized Med, Lab Mol Med, Cambridge, MA USA
[23] Univ Washington, Div Med Genet, Seattle, WA USA
关键词
ClinGen/Clinical Genome Resource; clinical validity; epilepsy; epileptic encephalopathy; gene-disease association; HUMAN PHENOTYPE ONTOLOGY; PRECISION MEDICINE; GENOME RESOURCE; DRAVET SYNDROME; DISEASE; SCN1A; HETEROGENEITY; MUTATIONS; VARIANTS; TWINS;
D O I
10.1002/humu.23632
中图分类号
Q3 [遗传学];
学科分类号
071007 ; 090102 ;
摘要
The field of epilepsy genetics is advancing rapidly and epilepsy is emerging as a frequent indication for diagnostic genetic testing. Within the larger ClinGen framework, the ClinGen Epilepsy Gene Curation Expert Panel is tasked with connecting two increasingly separate fields: the domain of traditional clinical epileptology, with its own established language and classification criteria, and the rapidly evolving area of diagnostic genetic testing that adheres to formal criteria for gene and variant curation. We identify critical components unique to the epilepsy gene curation effort, including: (a) precise phenotype definitions within existing disease and phenotype ontologies; (b) consideration of when epilepsy should be curated as a distinct disease entity; (c) strategies for gene selection; and (d) emerging rules for evaluating functional models for seizure disorders. Given that de novo variants play a prominent role in many of the epilepsies, sufficient genetic evidence is often awarded early in the curation process. Therefore, the emphasis of gene curation is frequently shifted toward an iterative precuration process to better capture phenotypic associations. We demonstrate that within the spectrum of neurodevelopmental disorders, gene curation for epilepsy-associated genes is feasible and suggest epilepsy-specific conventions, laying the groundwork for a curation process of all major epilepsy-associated genes.
引用
收藏
页码:1476 / 1484
页数:9
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