Entropy and dynamics of water in hydration layers of a bilayer

被引:81
作者
Debnath, Ananya [2 ]
Mukherjee, Biswaroop [1 ]
Ayappa, K. G. [2 ]
Maiti, Prabal K. [1 ]
Lin, Shiang-Tai [3 ]
机构
[1] Indian Inst Sci, Dept Phys, Ctr Condensed Matter Theory, Bangalore 560012, Karnataka, India
[2] Indian Inst Sci, Dept Chem Engn, Bangalore 560012, Karnataka, India
[3] Natl Taiwan Univ, Dept Chem Engn, Taipei 10617, Taiwan
关键词
MOLECULAR-DYNAMICS; THERMODYNAMIC PROPERTIES; FREE-ENERGIES; LIQUID WATER; DIELECTRIC-RELAXATION; JUMP REORIENTATION; SINGLE-MOLECULE; LIPID-BILAYERS; MODEL; BINDING;
D O I
10.1063/1.3494115
中图分类号
O64 [物理化学(理论化学)、化学物理学];
学科分类号
070304 ; 081704 ;
摘要
We compute the entropy and transport properties of water in the hydration layer of dipalmitoylphosphatidylcholine bilayer by using a recently developed theoretical scheme [two-phase thermodynamic model, termed as 2PT method; S.-T. Lin et al., J. Chem. Phys. 119, 11792 (2003)] based on the translational and rotational velocity autocorrelation functions and their power spectra. The weights of translational and rotational power spectra shift from higher to lower frequency as one goes from the bilayer interface to the bulk. Water molecules near the bilayer head groups have substantially lower entropy (48.36 J/mol/K) than water molecules in the intermediate region (51.36 J/mol/K), which have again lower entropy than the molecules (60.52 J/mol/K) in bulk. Thus, the entropic contribution to the free energy change (T Delta S) of transferring an interface water molecule to the bulk is 3.65 kJ/mol and of transferring intermediate water to the bulk is 2.75 kJ/mol at 300 K, which is to be compared with 6.03 kJ/mol for melting of ice at 273 K. The translational diffusion of water in the vicinity of the head groups is found to be in a subdiffusive regime and the rotational diffusion constant increases going away from the interface. This behavior is supported by the slower reorientational relaxation of the dipole vector and OH bond vector of interfacial water. The ratio of reorientational relaxation time for Legendre polynomials of order 1 and 2 is approximately 2 for interface, intermediate, and bulk water, indicating the presence of jump dynamics in these water molecules. (C) 2010 American Institute of Physics. [doi:10.1063/1.3494115]
引用
收藏
页数:14
相关论文
共 76 条
[1]  
[Anonymous], 1976, STAT MECH
[2]   NEW METHOD FOR PREDICTING BINDING-AFFINITY IN COMPUTER-AIDED DRUG DESIGN [J].
AQVIST, J ;
MEDINA, C ;
SAMUELSSON, JE .
PROTEIN ENGINEERING, 1994, 7 (03) :385-391
[3]   Water dynamics in the hydration layer around proteins and micelles [J].
Bagchi, B .
CHEMICAL REVIEWS, 2005, 105 (09) :3197-3219
[4]  
Berendsen H., 1981, INTERMOL FORCES
[5]   GROMACS - A MESSAGE-PASSING PARALLEL MOLECULAR-DYNAMICS IMPLEMENTATION [J].
BERENDSEN, HJC ;
VANDERSPOEL, D ;
VANDRUNEN, R .
COMPUTER PHYSICS COMMUNICATIONS, 1995, 91 (1-3) :43-56
[6]   MOLECULAR-DYNAMICS WITH COUPLING TO AN EXTERNAL BATH [J].
BERENDSEN, HJC ;
POSTMA, JPM ;
VANGUNSTEREN, WF ;
DINOLA, A ;
HAAK, JR .
JOURNAL OF CHEMICAL PHYSICS, 1984, 81 (08) :3684-3690
[7]  
Berne B.J., 1976, DYNAMIC LIGHT SCATTE
[8]   The behavior of reorientational correlation functions of water at the water-lipid bilayer interface [J].
Bhide, Shreyas Y. ;
Berkowitz, Max L. .
JOURNAL OF CHEMICAL PHYSICS, 2006, 125 (09)
[9]   Logarithmic decay of the orientational correlation function in supercooled liquids on the Ps to Ns time scale [J].
Cang, H ;
Novikov, VN ;
Fayer, MD .
JOURNAL OF CHEMICAL PHYSICS, 2003, 118 (06) :2800-2807
[10]   THERMODYNAMIC PROPERTIES OF A RIGID-SPHERE FLUID [J].
CARNAHAN, NF ;
STARLING, KE .
JOURNAL OF CHEMICAL PHYSICS, 1970, 53 (02) :600-&