Membrane Active Peptides and Their Biophysical Characterization

被引:160
作者
Avci, Fatma Gizem [1 ]
Akbulut, Berna Sariyar [1 ]
Ozkirimli, Elif [2 ]
机构
[1] Marmara Univ, Dept Bioengn, TR-34722 Istanbul, Turkey
[2] Bogazici Univ, Dept Chem Engn, TR-34342 Istanbul, Turkey
关键词
antimicrobial peptides; cell-penetrating peptides; biophysical characterization; uptake mechanism; membrane disruption; peptide-lipid interactions; CELL-PENETRATING PEPTIDES; SOLID-STATE NMR; X-RAY-DIFFRACTION; ISOTHERMAL TITRATION CALORIMETRY; MOLECULAR-DYNAMICS SIMULATIONS; HAIRPIN ANTIMICROBIAL PEPTIDE; ATOMIC-FORCE MICROSCOPY; AMPHIPATHIC ALPHA-HELIX; HIV-1 TAT PEPTIDE; LIPID-BILAYERS;
D O I
10.3390/biom8030077
中图分类号
Q5 [生物化学]; Q7 [分子生物学];
学科分类号
071010 ; 081704 ;
摘要
In the last 20 years, an increasing number of studies have been reported on membrane active peptides. These peptides exert their biological activity by interacting with the cell membrane, either to disrupt it and lead to cell lysis or to translocate through it to deliver cargos into the cell and reach their target. Membrane active peptides are attractive alternatives to currently used pharmaceuticals and the number of antimicrobial peptides (AMPs) and peptides designed for drug and gene delivery in the drug pipeline is increasing. Here, we focus on two most prominent classes of membrane active peptides; AMPs and cell-penetrating peptides (CPPs). Antimicrobial peptides are a group of membrane active peptides that disrupt the membrane integrity or inhibit the cellular functions of bacteria, virus, and fungi. Cell penetrating peptides are another group of membrane active peptides that mainly function as cargo-carriers even though they may also show antimicrobial activity. Biophysical techniques shed light on peptide-membrane interactions at higher resolution due to the advances in optics, image processing, and computational resources. Structural investigation of membrane active peptides in the presence of the membrane provides important clues on the effect of the membrane environment on peptide conformations. Live imaging techniques allow examination of peptide action at a single cell or single molecule level. In addition to these experimental biophysical techniques, molecular dynamics simulations provide clues on the peptide-lipid interactions and dynamics of the cell entry process at atomic detail. In this review, we summarize the recent advances in experimental and computational investigation of membrane active peptides with particular emphasis on two amphipathic membrane active peptides, the AMP melittin and the CPP pVEC.
引用
收藏
页数:43
相关论文
共 400 条
[1]   Isothermal titration calorimetry studies of the binding of the antimicrobial peptide gramicidin S to phospholipid bilayer membranes [J].
Abraham, T ;
Lewis, RNAH ;
Hodges, RS ;
McElhaney, RN .
BIOCHEMISTRY, 2005, 44 (33) :11279-11285
[2]   Flow cytometry: basic principles and applications [J].
Adan, Aysun ;
Alizada, Gunel ;
Kiraz, Yagmur ;
Baran, Yusuf ;
Nalbant, Ayten .
CRITICAL REVIEWS IN BIOTECHNOLOGY, 2017, 37 (02) :163-176
[3]   Conformational Plasticity of the Cell-Penetrating Peptide SAP As Revealed by Solid-State 19F-NMR and Circular Dichroism Spectroscopies [J].
Afonin, Sergii ;
Kubyslikin, Vladimir ;
Mykhailiuk, Pavel K. ;
Komarov, Igor V. ;
Ulrich, Anne S. .
JOURNAL OF PHYSICAL CHEMISTRY B, 2017, 121 (27) :6479-6491
[4]   CPPsite 2.0: a repository of experimentally validated cell-penetrating peptides [J].
Agrawal, Piyush ;
Bhalla, Sherry ;
Usmani, Salman Sadullah ;
Singh, Sandeep ;
Chaudhary, Kumardeep ;
Raghava, Gajendra P. S. ;
Gautam, Ankur .
NUCLEIC ACIDS RESEARCH, 2016, 44 (D1) :D1098-D1103
[5]   Systemic in vivo distribution of activatable cell penetrating peptides is superior to that of cell penetrating peptides [J].
Aguilera, Todd A. ;
Olson, Emilia S. ;
Timmers, Margaret M. ;
Jiang, Tao ;
Tsien, Roger Y. .
INTEGRATIVE BIOLOGY, 2009, 1 (5-6) :371-381
[6]   HIV-1 Tat membrane interactions probed using X-ray and neutron scattering, CD spectroscopy and MD simulations [J].
Akabori, Kiyotaka ;
Huang, Kun ;
Treece, Bradley W. ;
Jablin, Michael S. ;
Maranville, Brian ;
Woll, Arthur ;
Nagle, John F. ;
Garcia, Angel E. ;
Tristram-Nagle, Stephanie .
BIOCHIMICA ET BIOPHYSICA ACTA-BIOMEMBRANES, 2014, 1838 (12) :3078-3087
[7]   The Uptake Mechanism of the Cell-Penetrating pVEC Peptide [J].
Akdag, Ihsan Omur ;
Ozkirimli, Elif .
JOURNAL OF CHEMISTRY, 2013, 2013
[8]   Improving in Vivo Hepatic Transfection Activity by Controlling Intracellular Trafficking: The Function of GALA and Maltotriose [J].
Akita, Hidetaka ;
Masuda, Tomoya ;
Nishio, Takashi ;
Niikura, Kenichi ;
Ijiro, Kuniharu ;
Harashima, Hideyoshi .
MOLECULAR PHARMACEUTICS, 2011, 8 (04) :1436-1442
[9]   pVEC hydrophobic N-terminus is critical for antibacterial activity [J].
Alaybeyoglu, Begum ;
Akbulut, Berna Sariyar ;
Ozkirimli, Elif .
JOURNAL OF PEPTIDE SCIENCE, 2018, 24 (06)
[10]   The effect of a beta-lactamase inhibitor peptide on bacterial membrane structure and integrity: a comparative study [J].
Alaybeyoglu, Begum ;
Uluocak, Bilge Gedik ;
Akbulut, Berna Sariyar ;
Ozkirimli, Elif .
JOURNAL OF PEPTIDE SCIENCE, 2017, 23 (05) :374-383