共 114 条
Microbial community genomics in the ocean
被引:206
作者:

DeLong, EE
论文数: 0 引用数: 0
h-index: 0
机构: MIT, Div Biol Engn, Cambridge, MA 02139 USA
机构:
[1] MIT, Div Biol Engn, Cambridge, MA 02139 USA
[2] MIT, Dept Civil & Environm Engn, Cambridge, MA 02139 USA
基金:
英国科研创新办公室;
关键词:
D O I:
10.1038/nrmicro1158
中图分类号:
Q93 [微生物学];
学科分类号:
071005 ;
100705 ;
摘要:
Marine microbial communities were among the first microbial communities to be studied using cultivation-independent genomic approaches. Ocean-going genomic studies are now providing a more comprehensive description of the organisms and processes that shape microbial community structure, function and dynamics in the sea. Through the lens of microbial community genomics, a more comprehensive view of uncultivated microbial species, gene and biochemical pathway distributions, and naturally occurring genomic variability is being brought into sharper focus. Besides providing new perspectives on oceanic microbial communities, these new studies are now poised to reveal the fundamental principles that drive microbial ecological and evolutionary processes.
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页码:459 / 469
页数:11
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共 114 条
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