Colpomenia species from south and south-eastern Australia (Ectocarpales, Phaeophyceae): a DNA barcoding approach

被引:1
作者
Martins, Nuno Tavares [1 ]
Gurgel, Carlos Frederico D. [2 ,3 ]
Spokes, Tracey M. [3 ,4 ]
Cassano, Valeria [1 ]
机构
[1] Univ Sao Paulo, Inst Biociencias, Dept Bot, BR-05508090 Sao Paulo, SP, Brazil
[2] Univ Fed Santa Catarina, Ctr Ciencias Biol, Dept Bot, BR-88040900 Florianopolis, SC, Brazil
[3] State Herbarium South Australia, Dept Environm & Water, Adelaide, SA 5001, Australia
[4] Univ Adelaide, Sch Biol Sci, Adelaide, SA 5000, Australia
基金
巴西圣保罗研究基金会;
关键词
Australia; DNA barcode; COI-5P; Colpomenia; cox1; macroalgae; Phaeophyceae; species delimitation; seaweed; DELIMITATION METHODS; MARINE-ALGAE; DIVERSITY; SCYTOSIPHONACEAE; MARKERS; MACROALGAE; RHODOPHYTA; MORPHOLOGY; PATTERNS; COX3;
D O I
10.1071/SB21021
中图分类号
Q94 [植物学];
学科分类号
071001 ;
摘要
Defining species in the brown algal genus Colpomenia is a challenging endeavour because of their morphological similarity, overlapping phenotypic variation, the absence of conspicuous diagnostic characters, and often lack of reproductive structures crucial for their identification. Thus, the use of molecular tools has become widely used to study Colpomenia taxonomy and evolution. The following four Colpomenia species are described along the Australian coast: C. claytoniae M.Boo, K.M.Lee, G.Y.Cho & W.Nelson, C. ecuticulata M.J.Parsons, C. peregrina Sauvageau, and C. sinuosa (Mertens ex Roth) Derbes & Solier. The objective of this study was to assess the diversity of Colpomenia species in southern and south-eastern Australia by using DNA barcoding techniques and single-marker species delimitation methods. We generated 44 new COI-5P DNA sequences from nine different populations across three Australian states (South Australia, Victoria and Tasmania), and applied 13 variations of four species delimitation methods (ABDG, SPN, PTP, GMYC). Our results recognised three Colpomenia species in the region, namely, C. sinuosa, C. claytoniae, and C. peregrina. Colpomenia sinuosa is the most widely distributed species in Australia. Colpomenia peregrina and C. claytoniae presented high levels of intraspecific genetic divergence. We did not find C. ecuticulata, although it has been previously reported from nearby our sampling area.
引用
收藏
页码:587 / 594
页数:8
相关论文
共 51 条
[1]   Cryptic diversity and discordance in single-locus species delimitation methods within horned lizards (Phrynosomatidae: Phrynosoma) [J].
Blair, Christopher ;
Bryson, Robert W., Jr. .
MOLECULAR ECOLOGY RESOURCES, 2017, 17 (06) :1168-1182
[2]   Colpomenia claytonii sp nov (Scytosiphonaceae, Phaeophyceae) based on morphology and mitochondrial cox3 sequences [J].
Boo, Sung Min ;
Lee, Kyung Min ;
Cho, Ga Youn ;
Nelson, Wendy .
BOTANICA MARINA, 2011, 54 (02) :159-167
[3]   BEAST 2.5: An advanced software platform for Bayesian evolutionary analysis [J].
Bouckaert, Remco ;
Vaughan, Timothy G. ;
Barido-Sottani, Joelle ;
Duchene, Sebastian ;
Fourment, Mathieu ;
Gavryushkina, Alexandra ;
Heled, Joseph ;
Jones, Graham ;
Kuehnert, Denise ;
De Maio, Nicola ;
Matschiner, Michael ;
Mendes, Fabio K. ;
Mueller, Nicola F. ;
Ogilvie, Huw A. ;
du Plessis, Louis ;
Popinga, Alex ;
Rambaut, Andrew ;
Rasmussen, David ;
Siveroni, Igor ;
Suchard, Marc A. ;
Wu, Chieh-Hsi ;
Xie, Dong ;
Zhang, Chi ;
Stadler, Tanja ;
Drummond, Alexei J. .
PLOS COMPUTATIONAL BIOLOGY, 2019, 15 (04)
[4]   The systematics of Lobophora (Dictyotales, Phaeophyceae) in the western Atlantic and eastern Pacific oceans: eight new species [J].
Camacho, Olga ;
Fernandez-Garcia, Cindy ;
Vieira, Christophe ;
Gurgel, Carlos Frederico D. ;
Norris, James N. ;
Freshwater, David Wilson ;
Fredericq, Suzanne .
JOURNAL OF PHYCOLOGY, 2019, 55 (03) :611-624
[5]   How to fail at species delimitation [J].
Carstens, Bryan C. ;
Pelletier, Tara A. ;
Reid, Noah M. ;
Satler, Jordan D. .
MOLECULAR ECOLOGY, 2013, 22 (17) :4369-4383
[6]  
CLAYTON M N, 1975, Phycologia, V14, P187, DOI 10.2216/i0031-8884-14-4-187.1
[7]   TCS: a computer program to estimate gene genealogies [J].
Clement, M ;
Posada, D ;
Crandall, KA .
MOLECULAR ECOLOGY, 2000, 9 (10) :1657-1659
[8]  
Cormaci M., 2012, Bollettino dell'Accademia Gioenia di Scienze Naturali di Catania, V45, P1, DOI DOI 10.1016/J.ECSS.2016.06.007
[9]   jModelTest 2: more models, new heuristics and parallel computing [J].
Darriba, Diego ;
Taboada, Guillermo L. ;
Doallo, Ramon ;
Posada, David .
NATURE METHODS, 2012, 9 (08) :772-772
[10]   Species-delimitation and phylogenetic analyses of some cosmopolitan species of Hypnea (Rhodophyta) reveal synonyms and misapplied names to H.cervicornis, including a new species from Brazil [J].
de Jesus, Priscila Barreto ;
Nauer, Fabio ;
Lyra, Goia de Mattos ;
Cassano, Valeria ;
Oliveira, Mariana Cabral ;
de Castro Nunes, Jose Marcos ;
Schnadelbach, Alessandra Selbach .
JOURNAL OF PHYCOLOGY, 2016, 52 (05) :774-792