Funneled angle landscapes for helical proteins

被引:5
作者
Kozak, John J. [1 ]
Gray, Harry B. [2 ]
Garza-Lopez, Roberto A. [3 ,4 ]
机构
[1] Depaul Univ, Dept Chem, Chicago, IL 60604 USA
[2] CALTECH, Beckman Inst, Pasadena, CA 91125 USA
[3] Pomona Coll, Dept Chem, Claremont, CA 91711 USA
[4] Pomona Coll, Seaver Chem Lab, Claremont, CA 91711 USA
关键词
Protein folding; Cytochromes; Myoglobin; ENERGY LANDSCAPE; FOLDING KINETICS; STATISTICAL POTENTIALS; INTERMEDIATE; B(562); APOCYTOCHROME-B5; THERMODYNAMICS; STABILITY; PATHWAY; STATE;
D O I
10.1016/j.jinorgbio.2020.111091
中图分类号
Q5 [生物化学]; Q7 [分子生物学];
学科分类号
071010 ; 081704 ;
摘要
We use crystallographic data for four helical iron proteins (cytochrome c-b(562), cytochrome c', sperm whale myoglobin, human cytoglobin) to calculate radial and angular signatures as each unfolds from the native state stepwise though four unfolded states. From these data we construct an angle phase diagram to display the evolution of each protein from its native state; and, in turn, the phase diagram is used to construct a funneled angle landscape for comparison with the topography of its folding energy landscape. We quantify the departure of individual helical and turning regions from the areal, angular profile of corresponding regions of the native state. This procedure allows us to identify the similarities and differences among individual helical and turning regions in the early stages of unfolding of the four helical heme proteins.
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页数:13
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