The complete mitochondrial genome of mungbean Vigna radiata var. radiata NM92 and a phylogenetic analysis of crops in angiosperms

被引：5

作者：

Lin, Ching-Ping ^{[1
,2
]}

Lo, Hsiao-Feng ^{[3
]}

Chen, Chien-Yu ^{[4
,5
]}

Chen, Long-Fang Oliver ^{[1
]}

机构：

[1] Acad Sinica, Inst Plant & Microbial Biol, Taipei 115, Taiwan

[2] Univ Taipei, Dept Earth & Life Sci, Taipei, Taiwan

[3] Natl Taiwan Univ, Dept Hort & Landscape Architecture, Taipei 10764, Taiwan

[4] Natl Taiwan Univ, Dept Bioind Mechatron Engn, Taipei 10764, Taiwan

[5] Natl Taiwan Univ, Ctr Syst Biol, Taipei 10764, Taiwan

来源：

MITOCHONDRIAL DNA PART A | 2016年 / 27卷 / 05期

关键词：

Mungbean; mitochondrial genome; Vigna radiata var. radiata;

D O I：

10.3109/19401736.2015.1079879

中图分类号：

Q3 [遗传学];

学科分类号：

071007 ; 090102 ;

摘要：

The entire mitogenome of the Vigna radiata var. radiata NM92 was identified as a circular molecule of 401 262 bp length (DDBJ accession number: AP014716). The contents of A, T, C, and G in the NM92 mitogenome were found to be 27.48%, 27.41%, 22.63%, and 22.48%, respectively. The NM92 mitogenome encoded 3 rRNAs, 16 tRNAs and 33 proteins. Eight protein-coding genes (nad1, nad2, nad4, nad5, nad7, rps3, and rps10) centain introns. Among them, three (nad1, nad2, and nad5) are trans-spliced genes. A phylogenetic tree was reconstructed using the 21 protein-coding genes of 16 crops. A species of gymnosperms, Cycas, was selected as the outgroup. This complete mitogenome sequence provides useful information to understand the cultivation of Vigna radiata and other crops.

引用

页码：3731 / 3732

页数：2

共 5 条

[1] The Mitochondrial Genome of the Legume Vigna radiata and the Analysis of Recombination across Short Mitochondrial Repeats [J].

Alverson, Andrew J. ;

Zhuo, Shi ;

Rice, Danny W. ;

Sloan, Daniel B. ;

Palmer, Jeffrey D. .

PLOS ONE, 2011, 6 (01)

[2] Reconstructing mitochondrial genomes directly from genomic next-generation sequencing reads-a baiting and iterative mapping approach [J].

Hahn, Christoph ;

Bachmann, Lutz ;

Chevreux, Bastien .

NUCLEIC ACIDS RESEARCH, 2013, 41 (13) :e129

[3] Transcriptional Slippage and RNA Editing Increase the Diversity of Transcripts in Chloroplasts: Insight from Deep Sequencing of Vigna radiata Genome and Transcriptome [J].

Lin, Ching-Ping ;

Ko, Chia-Yun ;

Kuo, Ching-I ;

Liu, Mao-Sen ;

Schafleitner, Roland ;

Chen, Long-Fang Oliver .

PLOS ONE, 2015, 10 (06)

[4] The tRNAscan-SE, snoscan and snoGPS web servers for the detection of tRNAs and snoRNAs [J].

Schattner, P ;

Brooks, AN ;

Lowe, TM .

NUCLEIC ACIDS RESEARCH, 2005, 33 :W686-W689

[5]

Tamura K, 2013, MOL BIOL EVOL, V30, P2725, DOI [10.1093/molbev/mst197, 10.1093/molbev/msr121]

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