A molecular view of the role of chirality in charge-driven polypeptide complexation

被引:63
作者
Hoffmann, K. Q. [1 ]
Perry, S. L. [1 ,2 ]
Leon, L. [1 ,3 ]
Priftis, D. [1 ]
Tirrell, M. [1 ,3 ]
de Pablo, J. J. [1 ,3 ]
机构
[1] Univ Chicago, Inst Mol Engn, Chicago, IL 60637 USA
[2] Univ Massachusetts, Dept Chem Engn, Amherst, MA 01003 USA
[3] Argonne Natl Lab, Inst Mol Engn, Argonne, IL 70439 USA
关键词
SECONDARY STRUCTURE; REPLICA EXCHANGE; FORCE-FIELD; MONTE-CARLO; COACERVATION; SIMULATIONS; SYSTEMS; DYNAMICS; MODEL; POLYSACCHARIDES;
D O I
10.1039/c4sm02336f
中图分类号
O64 [物理化学(理论化学)、化学物理学];
学科分类号
070304 ; 081704 ;
摘要
Polyelectrolyte molecules of opposite charge are known to form stable complexes in solution. Depending on the system conditions, such complexes can be solid or liquid. The latter are known as complex coacervates, and they appear as a second liquid phase in equilibrium with a polymer-dilute aqueous phase. This work considers the complexation between poly(glutamic acid) and poly(lysine), which is of particular interest because it enables examination of the role of chirality in ionic complexation, without changes to the overall chemical composition. Systematic atomic-level simulations are carried out for chains of poly(glutamic acid) and poly(lysine) with varying combinations of chirality along the backbone. Achiral chains form unstructured complexes. In contrast, homochiral chains lead to formation of stable beta-sheets between molecules of opposite charge, and experiments indicate that beta-sheet formation is correlated with the formation of solid precipitates. Changes in chirality along the peptide backbone are found to cause "kinks" in the beta-sheets. These are energetically unfavorable and result in irregular structures that are more difficult to pack together. Taken together, these results provide new insights that may be of use for the development of simple yet strong bioinspired materials consisting of beta-rich domains and amorphous regions.
引用
收藏
页码:1525 / 1538
页数:14
相关论文
共 55 条
[1]   COMPLEXES OF POLY(L-GLUTAMIC ACID) WITH OLIGO(ETHYLENEIMINE)S AND THEIR QUATERNARY DERIVATIVES - EFFECT OF CHAIN-LENGTH OF OLIGOMERS ON COMPLEXATION [J].
ABE, K ;
KOIDE, M ;
TSUCHIDA, E .
POLYMER JOURNAL, 1977, 9 (01) :73-78
[2]   Anatomy of energetic changes accompanying urea-induced protein denaturation [J].
Auton, Matthew ;
Holthauzen, Luis Marcelo F. ;
Bolen, D. Wayne .
PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA, 2007, 104 (39) :15317-15322
[3]   Ultrafast 2D IR microscopy [J].
Baiz, Carlos R. ;
Schach, Denise ;
Tokmakoff, Andrei .
OPTICS EXPRESS, 2014, 22 (15) :18724-18735
[4]   Implementation of the CHARMM Force Field in GROMACS: Analysis of Protein Stability Effects from Correction Maps, Virtual Interaction Sites, and Water Models [J].
Bjelkmar, Par ;
Larsson, Per ;
Cuendet, Michel A. ;
Hess, Berk ;
Lindahl, Erik .
JOURNAL OF CHEMICAL THEORY AND COMPUTATION, 2010, 6 (02) :459-466
[5]   PLUMED: A portable plugin for free-energy calculations with molecular dynamics [J].
Bonomi, Massimiliano ;
Branduardi, Davide ;
Bussi, Giovanni ;
Camilloni, Carlo ;
Provasi, Davide ;
Raiteri, Paolo ;
Donadio, Davide ;
Marinelli, Fabrizio ;
Pietrucci, Fabio ;
Broglia, Ricardo A. ;
Parrinello, Michele .
COMPUTER PHYSICS COMMUNICATIONS, 2009, 180 (10) :1961-1972
[6]   Hamiltonian replica exchange in GROMACS: a flexible implementation [J].
Bussi, Giovanni .
MOLECULAR PHYSICS, 2014, 112 (3-4) :379-384
[7]   PARTICLE MESH EWALD - AN N.LOG(N) METHOD FOR EWALD SUMS IN LARGE SYSTEMS [J].
DARDEN, T ;
YORK, D ;
PEDERSEN, L .
JOURNAL OF CHEMICAL PHYSICS, 1993, 98 (12) :10089-10092
[8]   Complex coacervation of proteins and anionic polysaccharides [J].
de Kruif, CG ;
Weinbreck, F ;
de Vries, R .
CURRENT OPINION IN COLLOID & INTERFACE SCIENCE, 2004, 9 (05) :340-349
[9]   Parallel tempering: Theory, applications, and new perspectives [J].
Earl, DJ ;
Deem, MW .
PHYSICAL CHEMISTRY CHEMICAL PHYSICS, 2005, 7 (23) :3910-3916
[10]   Viscous Friction of Hydrogen-Bonded Matter [J].
Erbas, Aykut ;
Horinek, Dominik ;
Netz, Roland R. .
JOURNAL OF THE AMERICAN CHEMICAL SOCIETY, 2012, 134 (01) :623-630