One Crystal, Two Temperatures: Cryocooling Penalties Alter Ligand Binding to Transient Protein Sites

被引:64
作者
Fischer, Marcus [2 ]
Shoichet, Brian K. [2 ]
Fraser, James S. [1 ]
机构
[1] Univ Calif San Francisco, Dept Bioengn & Therapeut Sci, San Francisco, CA 94158 USA
[2] Univ Calif San Francisco, Dept Pharmaceut Chem, San Francisco, CA 94158 USA
关键词
allosterism; biophysics; ligand discovery; structural biology; thermodynamics; X-ray diffraction; X-RAY CRYSTALLOGRAPHY; CYTOCHROME-C PEROXIDASE; ALLOSTERIC SITES; HEME PEROXIDASE; DRUG DISCOVERY; CRYOCRYSTALLOGRAPHY;
D O I
10.1002/cbic.201500196
中图分类号
Q5 [生物化学]; Q7 [分子生物学];
学科分类号
071010 ; 081704 ;
摘要
Interrogating fragment libraries by X-ray crystallography is a powerful strategy for discovering allosteric ligands for protein targets. Cryocooling of crystals should theoretically increase the fraction of occupied binding sites and decrease radiation damage. However, it might also perturb protein conformations that can be accessed at room temperature. Using data from crystals measured consecutively at room temperature and at cryogenic temperature, we found that transient binding sites could be abolished at the cryogenic temperatures employed by standard approaches. Changing the temperature at which the crystallographic data was collected could provide a deliberate perturbation to the equilibrium of protein conformations and help to visualize hidden sites with great potential to allosterically modulate protein function.
引用
收藏
页码:1560 / 1564
页数:5
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