Synthetic RNA-based switches for mammalian gene expression control

被引:43
作者
Auslander, Simon [1 ]
Fussenegger, Martin [1 ,2 ]
机构
[1] ETH, Dept Biosyst Sci & Engn, Mattenstr 26, CH-4058 Basel, Switzerland
[2] Univ Basel, Fac Sci, Mattenstr 26, CH-4058 Basel, Switzerland
基金
欧洲研究理事会;
关键词
RIBOSWITCHES; PROTEINS; DESIGN; CELLS; SELECTION; BINDING;
D O I
10.1016/j.copbio.2017.03.011
中图分类号
Q5 [生物化学];
学科分类号
071010 ; 081704 ;
摘要
Synthetic ribonucleic acid (RNA)-based gene switches control RNA functions in a ligand-responsive manner. Key building blocks are aptamers that specifically bind to small molecules or protein ligands. Engineering approaches often combine rational design and high-throughput screening to identify optimal connection sites or sequences. In this report, we discuss basic principles and emerging design strategies for the engineering of RNA-based gene switches in mammalian cells. Their small size compared with those of transcriptional gene switches, together with advancements in design strategies and performance, may bring RNA-based switches to the forefront of biomedical and biotechnological applications.
引用
收藏
页码:54 / 60
页数:7
相关论文
共 48 条
[1]   Artificial control of gene expression in mammalian cells by modulating RNA interference through aptamer-small molecule interaction [J].
An, CI ;
Trinh, VB ;
Yokobayashi, Y .
RNA, 2006, 12 (05) :710-716
[2]  
Ausländer S, 2014, NAT METHODS, V11, P1154, DOI [10.1038/NMETH.3136, 10.1038/nmeth.3136]
[3]   Programmable single-cell mammalian biocomputers [J].
Auslaender, Simon ;
Auslaender, David ;
Mueller, Marius ;
Wieland, Markus ;
Fussenegger, Martin .
NATURE, 2012, 487 (7405) :123-+
[4]   A ligand-dependent hammerhead ribozyme switch for controlling mammalian gene expression [J].
Auslaender, Simon ;
Ketzer, Patrick ;
Hartig, Joerg S. .
MOLECULAR BIOSYSTEMS, 2010, 6 (05) :807-814
[5]  
Auslander S, 2016, ANGEW CHEM INT ED EN
[6]   Conditional Control of Mammalian Gene Expression by Tetracycline-Dependent Hammerhead Ribozymes [J].
Beilstein, Kim ;
Wittmann, Alexander ;
Grez, Manuel ;
Suess, Beatrix .
ACS SYNTHETIC BIOLOGY, 2015, 4 (05) :526-534
[7]   Control of alphavirus-based gene expression using engineered riboswitches [J].
Bell, Christie L. ;
Yu, Dong ;
Smolke, Christina D. ;
Geall, Andrew J. ;
Beard, Clayton W. ;
Mason, Peter W. .
VIROLOGY, 2015, 483 :302-311
[8]  
Bloom RJ, 2014, NAT METHODS, V11, P1147, DOI [10.1038/NMETH.3100, 10.1038/nmeth.3100]
[9]  
Breaker RR, 2012, COLD SPRING HERB PER, V4
[10]   A renaissance in RNA synthetic biology: new mechanisms, applications and tools for the future [J].
Chappell, James ;
Watters, Kyle E. ;
Takahashi, Melissa K. ;
Lucks, Julius B. .
CURRENT OPINION IN CHEMICAL BIOLOGY, 2015, 28 :47-56