The complete chloroplast genome of Azara serrata (Salicaceae) from Chile

被引：0
作者：
Su, Min [1 ]
Kang, Minghui [1 ]
Li, Mengmeng [1 ]
Wang, Deyan [1 ]
Xu, Xiaoting [1 ]
机构：
[1] Sichuan Univ, Coll Life Sci, Key Lab Bioresource & Ecoenvironm, Minist Educ, Chengdu 610065, Sichuan, Peoples R China
来源：
MITOCHONDRIAL DNA PART B-RESOURCES | 2019年 / 4卷 / 01期
关键词：
Azara serrate; chloroplast genome; phylogenetic analysis;
D O I：
10.1080/23802359.2018.1535845
中图分类号：
Q3 [遗传学];
学科分类号：
071007 ; 090102 ;
摘要：
The chloroplast (cp) genome sequence of Azara serrata has been characterized from Illumina pair-end sequencing. The complete cp genome was 158,306 bp in length, containing a large single copy region (LSC) of 85,059 bp and a small single copy region (SSC) of 17,889 bp, which were separated by a pair of 27,679 bp inverted repeat regions (IRs). The genome contained 129 genes, including 85 protein-coding genes, 36 tRNA genes, and 8 rRNA genes. The overall GC content is 36.5%, while the corresponding values of the LSC, SSC, and IR regions are 34.3, 30.0, and 42.0%, respectively. Further, phylogenetic analysis suggested that the A. serrata is a sister of Flacourtia indica and is an outgroup to the remaining genera of Saliaceae.
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收藏
页码：12 / 13
页数：2
相关论文
共 9 条
  • [1] NOVOPlasty: de novo assembly of organelle genomes from whole genome data
    Dierckxsens, Nicolas
    Mardulyn, Patrick
    Smits, Guillaume
    [J]. NUCLEIC ACIDS RESEARCH, 2017, 45 (04)
  • [2] Doyle JJ., 1987, Phytochem Bull, V19, P11, DOI DOI 10.1016/0031-9422(80)85004-7
  • [3] PLANN: A COMMAND-LINE APPLICATION FOR ANNOTATING PLASTOME SEQUENCES
    Huang, Daisie I.
    Cronk, Quentin C. B.
    [J]. APPLICATIONS IN PLANT SCIENCES, 2015, 3 (08):
  • [4] MAFFT Multiple Sequence Alignment Software Version 7: Improvements in Performance and Usability
    Katoh, Kazutaka
    Standley, Daron M.
    [J]. MOLECULAR BIOLOGY AND EVOLUTION, 2013, 30 (04) : 772 - 780
  • [5] Geneious Basic: An integrated and extendable desktop software platform for the organization and analysis of sequence data
    Kearse, Matthew
    Moir, Richard
    Wilson, Amy
    Stones-Havas, Steven
    Cheung, Matthew
    Sturrock, Shane
    Buxton, Simon
    Cooper, Alex
    Markowitz, Sidney
    Duran, Chris
    Thierer, Tobias
    Ashton, Bruce
    Meintjes, Peter
    Drummond, Alexei
    [J]. BIOINFORMATICS, 2012, 28 (12) : 1647 - 1649
  • [6] Kumar S, 2016, MOL BIOL EVOL, V33, P1870, DOI [10.1093/molbev/msw054, 10.1093/molbev/msv279]
  • [7] OrganellarGenomeDRAW-a suite of tools for generating physical maps of plastid and mitochondrial genomes and visualizing expression data sets
    Lohse, Marc
    Drechsel, Oliver
    Kahlau, Sabine
    Bock, Ralph
    [J]. NUCLEIC ACIDS RESEARCH, 2013, 41 (W1) : W575 - W581
  • [8] THE NEIGHBOR-JOINING METHOD - A NEW METHOD FOR RECONSTRUCTING PHYLOGENETIC TREES
    SAITOU, N
    NEI, M
    [J]. MOLECULAR BIOLOGY AND EVOLUTION, 1987, 4 (04) : 406 - 425
  • [9] Plastome phylogeny and lineage diversification of Salicaceae with focus on poplars and willows
    Zhang, Lei
    Xi, Zhenxiang
    Wang, Mingcheng
    Guo, Xinyi
    Ma, Tao
    [J]. ECOLOGY AND EVOLUTION, 2018, 8 (16): : 7817 - 7823
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