Structure and function of the global ocean microbiome

被引：1915

作者：

Sunagawa, Shinichi ^{[1
]}

Coelho, Luis Pedro ^{[1
]}

Chaffron, Samuel ^{[2
,3
,4
]}

Kultima, Jens Roat ^{[1
]}

Labadie, Karine ^{[5
]}

Salazar, Guillem ^{[6
]}

Djahanschiri, Bardya ^{[1
]}

Zeller, Georg ^{[1
]}

Mende, Daniel R. ^{[1
]}

Alberti, Adriana ^{[5
]}

Cornejo-Castillo, Francisco M. ^{[6
]}

Costea, Paul I. ^{[1
]}

Cruaud, Corinne ^{[5
]}

d'Ovidio, Francesco ^{[7
]}

Engelen, Stefan ^{[5
]}

Ferrera, Isabel ^{[6
]}

Gasol, Josep M. ^{[6
]}

Guidi, Lionel ^{[8
,9
]}

Hildebrand, Falk ^{[1
]}

Kokoszka, Florian ^{[10
,11
,12
,13
]}

Lepoivre, Cyrille ^{[14
]}

Lima-Mendez, Gipsi ^{[2
,3
,4
]}

Poulain, Julie ^{[5
]}

Poulos, Bonnie T. ^{[15
]}

Royo-Llonch, Marta ^{[6
]}

Sarmento, Hugo ^{[6
,16
]}

Vieira-Silva, Sara ^{[2
,3
,4
]}

Dimier, Celine ^{[10
,11
,12
,17
,18
]}

Picheral, Marc ^{[8
,9
]}

Searson, Sarah ^{[8
,9
]}

Kandels-Lewis, Stefanie ^{[1
,19
]}

Bowler, Chris ^{[10
,11
,12
]}

de Vargas, Colomban ^{[17
,18
]}

Gorsky, Gabriel ^{[8
,9
]}

Grimsley, Nigel ^{[20
,21
]}

Hingamp, Pascal ^{[14
]}

Iudicone, Daniele ^{[22
]}

Jaillon, Olivier ^{[5
,23
,24
]}

Not, Fabrice ^{[17
,18
]}

Ogata, Hiroyuki ^{[25
]}

Pesant, Stephane ^{[26
,27
]}

Speich, Sabrina ^{[28
,29
]}

Stemmann, Lars ^{[8
,9
]}

Sullivan, Matthew B. ^{[15
]}

Weissenbach, Jean ^{[5
,23
,24
]}

Wincker, Patrick ^{[5
,23
,24
]}

Karsenti, Eric ^{[10
,11
,12
,19
]}

Raes, Jeroen ^{[2
,3
,4
]}

Acinas, Silvia G. ^{[6
]}

Bork, Peer ^{[1
,30
]}

机构：

[1] European Mol Biol Lab, Struct & Computat Biol, D-69117 Heidelberg, Germany

[2] Katholieke Univ Leuven, Rega Inst, Dept Microbiol & Immunol, B-3000 Leuven, Belgium

[3] VIB, Ctr Biol Dis, B-3000 Leuven, Belgium

[4] Vrije Univ Brussel, Dept Appl Biol Sci, B-1050 Brussels, Belgium

[5] CEA, Inst Genom, GENOSCOPE, F-91057 Evry, France

[6] CSIC, Inst Marine Sci ICM, Dept Marine Biol & Oceanog, E-08003 Barcelona, Spain

[7] Univ Paris 06, Sorbonne Univ, CNRS IRD MNHN, LOCEAN Lab, F-75005 Paris, France

[8] CNRS, UMR 7093, Oceanog Lab, Observ Oceanol, F-06230 Villefranche Sur Mer, France

[9] Univ Paris 06, Sorbonne Univ, UMR 7093, LOV,Observ Oceanol, F-06230 Villefranche Sur Mer, France

[10] Ecole Normale Super, IBENS, F-75005 Paris, France

[11] INSERM, U1024, Paris, France

[12] CNRS, UMR 8197, F-75005 Paris, France

[13] Lab Phys Oceans UBO IUEM, F-29820 Plouzane, France

[14] Aix Marseille Univ, CNRS IGS UMR 7256, F-13288 Marseille, France

[15] Univ Arizona, Dept Ecol & Evolutionary Biol, Tucson, AZ 85721 USA

[16] Univ Fed Sao Carlos UFSCar, Dept Hydrobiol, BR-13565905 Sao Paulo, Brazil

[17] CNRS, UMR 7144, Stn Biol Roscoff, F-29680 Roscoff, France

[18] Univ Paris 06, Sorbonne Univ, UMR 7144, Stn Biol Roscoff, F-29680 Roscoff, France

[19] European Mol Biol Lab, Directors Res, D-69117 Heidelberg, Germany

[20] CNRS, UMR 7232, BIOM, F-66650 Banyuls Sur Mer, France

[21] Univ Paris 06, Sorbonne Univ, OOB, F-66650 Banyuls Sur Mer, France

[22] Stn Zool A Dohrn, I-80121 Naples, Italy

[23] CNRS, UMR 8030, CP5706, Evry, France

[24] Univ Evry, UMR 8030, CP5706, Evry, France

[25] Kyoto Univ, Inst Chem Res, Kyoto 6110011, Japan

[26] Univ Bremen, Data Publisher Earth & Environm Sci, PANGAEA, D-28359 Bremen, Germany

[27] Univ Bremen, Ctr Marine Environm Sci, MARUM, D-28359 Bremen, Germany

[28] Ecole Normale Super, LMD, Dept Geosci, F-75231 Paris 05, France

[29] UBO IUEM, Lab Phys Oceans, F-29820 Plouzane, France

[30] Max Delbruck Ctr Mol Med, D-13092 Berlin, Germany

来源：

SCIENCE | 2015年 / 348卷 / 6237期

基金：

日本学术振兴会; 欧洲研究理事会; 芬兰科学院;

关键词：

COMMUNITY STRUCTURE; DIVERSITY; PATTERNS; PROKARYOTES; DISPERSAL; EFFICIENT; RICHNESS; GRADIENT; BACTERIA; DATABASE;

D O I：

10.1126/science.1261359

中图分类号：

O [数理科学和化学]; P [天文学、地球科学]; Q [生物科学]; N [自然科学总论];

学科分类号：

07 ; 0710 ; 09 ;

摘要：

Microbes are dominant drivers of biogeochemical processes, yet drawing a global picture of functional diversity, microbial community structure, and their ecological determinants remains a grand challenge. We analyzed 7.2 terabases of metagenomic data from 243 Tara Oceans samples from 68 locations in epipelagic and mesopelagic waters across the globe to generate an ocean microbial reference gene catalog with >40 million nonredundant, mostly novel sequences from viruses, prokaryotes, and picoeukaryotes. Using 139 prokaryote-enriched samples, containing >35,000 species, we show vertical stratification with epipelagic community composition mostly driven by temperature rather than other environmental factors or geography. We identify ocean microbial core functionality and reveal that >73% of its abundance is shared with the human gut microbiome despite the physicochemical differences between these two ecosystems.

引用

页数：9

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