Creating and characterizing communities of human gut microbes in gnotobiotic mice

被引:97
作者
Faith, Jeremiah J. [1 ]
Rey, Federico E. [1 ]
O'Donnell, David [1 ]
Karlsson, Maria [1 ]
McNulty, Nathan P. [1 ]
Kallstrom, George [1 ]
Goodman, Andrew L. [1 ]
Gordon, Jeffrey I. [1 ]
机构
[1] Washington Univ, Sch Med, Ctr Genome Sci & Syst Biol, St Louis, MO 63130 USA
关键词
SYMBIONT; CATALOG;
D O I
10.1038/ismej.2010.110
中图分类号
Q14 [生态学(生物生态学)];
学科分类号
071012 ; 0713 ;
摘要
引用
收藏
页码:1094 / 1098
页数:6
相关论文
共 22 条
[1]   Microbial regulation of intestinal radiosensitivity [J].
Crawford, PA ;
Gordon, JI .
PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA, 2005, 102 (37) :13254-13259
[2]   Regulation of myocardial ketone body metabolism by the gut microbiota during nutrient deprivation [J].
Crawford, Peter A. ;
Crowley, Jan R. ;
Sambandam, Nandakumar ;
Muegge, Brian D. ;
Costello, Elizabeth K. ;
Hamady, Micah ;
Knight, Rob ;
Gordon, Jeffrey I. .
PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA, 2009, 106 (27) :11276-11281
[3]   A Mesocosm of Lactobacillus johnsonii, Bifidobacterium longum, and Escherichia coli in the Mouse Gut [J].
Denou, Emmanuel ;
Rezzonico, Enea ;
Panoff, Jean-Michel ;
Arigoni, Fabrizio ;
Bruessow, Harald .
DNA AND CELL BIOLOGY, 2009, 28 (08) :413-422
[4]   Identifying Genetic Determinants Needed to Establish a Human Gut Symbiont in Its Habitat [J].
Goodman, Andrew L. ;
McNulty, Nathan P. ;
Zhao, Yue ;
Leip, Douglas ;
Mitra, Robi D. ;
Lozupone, Catherine A. ;
Knight, Rob ;
Gordon, Jeffrey I. .
CELL HOST & MICROBE, 2009, 6 (03) :279-289
[5]   SHORT-CHAIN FATTY-ACIDS IN THE NORMAL HUMAN FECES [J].
HOVERSTAD, T ;
FAUSA, O ;
BJORNEKLETT, A ;
BOHMER, T .
SCANDINAVIAN JOURNAL OF GASTROENTEROLOGY, 1984, 19 (03) :375-381
[6]   Symbiotic gut microbes modulate human metabolic phenotypes [J].
Li, Min ;
Wang, Baohong ;
Zhang, Menghui ;
Rantalainen, Mattias ;
Wang, Shengyue ;
Zhou, Haokui ;
Zhang, Yan ;
Shen, Jian ;
Pang, Xiaoyan ;
Zhang, Meiling ;
Wei, Hua ;
Chen, Yu ;
Lu, Haifeng ;
Zuo, Jian ;
Su, Mingming ;
Qiu, Yunping ;
Jia, Wei ;
Xiao, Chaoni ;
Smith, Leon M. ;
Yang, Shengli ;
Holmes, Elaine ;
Tang, Huiru ;
Zhao, Guoping ;
Nicholson, Jeremy K. ;
Li, Lanjuan ;
Zhao, Liping .
PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA, 2008, 105 (06) :2117-2122
[7]   Characterizing a model human gut microbiota composed of members of its two dominant bacterial phyla [J].
Mahowald, Michael A. ;
Rey, Federico E. ;
Seedorf, Henning ;
Turnbaugh, Peter J. ;
Fulton, Robert S. ;
Wollam, Aye ;
Shah, Neha ;
Wang, Chunyan ;
Magrini, Vincent ;
Wilson, Richard K. ;
Cantarel, Brandi L. ;
Coutinho, Pedro M. ;
Henrissat, Bernard ;
Crock, Lara W. ;
Russell, Alison ;
Verberkmoes, Nathan C. ;
Hettich, Robert L. ;
Gordon, Jeffrey I. .
PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA, 2009, 106 (14) :5859-5864
[8]   Probiotic modulation of symbiotic gut microbial-host metabolic interactions in a humanized microbiome mouse model [J].
Martin, Francois-Pierre J. ;
Wang, Yulan ;
Sprenger, Norbert ;
Yap, Ivan K. S. ;
Lundstedt, Torbjorn ;
Lek, Per ;
Rezzi, Serge ;
Ramadan, Ziad ;
van Bladeren, Peter ;
Fay, Laurent B. ;
Kochhar, Sunil ;
Lindon, John C. ;
Holmes, Elaine ;
Nicholson, Jeremy K. .
MOLECULAR SYSTEMS BIOLOGY, 2008, 4 (1)
[9]   Metagenomic Sequencing of an In Vitro-Simulated Microbial Community [J].
Morgan, Jenna L. ;
Darling, Aaron E. ;
Eisen, Jonathan A. .
PLOS ONE, 2010, 5 (04)
[10]   A Catalog of Reference Genomes from the Human Microbiome [J].
Nelson, Karen E. ;
Weinstock, George M. ;
Highlander, Sarah K. ;
Worley, Kim C. ;
Creasy, Heather Huot ;
Wortman, Jennifer Russo ;
Rusch, Douglas B. ;
Mitreva, Makedonka ;
Sodergren, Erica ;
Chinwalla, Asif T. ;
Feldgarden, Michael ;
Gevers, Dirk ;
Haas, Brian J. ;
Madupu, Ramana ;
Ward, Doyle V. ;
Birren, BruceW. ;
Gibbs, Richard A. ;
Methe, Barbara ;
Petrosino, Joseph F. ;
Strausberg, Robert L. ;
Sutton, Granger G. ;
White, Owen R. ;
Wilson, Richard K. ;
Durkin, Scott ;
Gujja, Sharvari ;
Howarth, Clint ;
Kodira, Chinnappa D. ;
Kyrpides, Nikos ;
Madupu, Ramana ;
Mehta, Teena ;
Mitreva, Makedonka ;
Muzny, Donna M. ;
Pearson, Matthew ;
Pepin, Kymberlie ;
Pati, Amrita ;
Qin, Xiang ;
Yandava, Chandri ;
Zeng, Qiandong ;
Zhang, Lan ;
Berlin, Aaron M. ;
Chen, Lei ;
Hepburn, Theresa A. ;
Johnson, Justin ;
McCorrison, Jamison ;
Miller, Jason ;
Minx, Pat ;
Nusbaum, Chad ;
Russ, Carsten ;
Sutton, Granger G. ;
Sykes, Sean M. .
SCIENCE, 2010, 328 (5981) :994-999