Consensus of classification trees for skin sensitisation hazard prediction

被引:39
作者
Asturiol, D. [1 ]
Casati, S. [1 ]
Worth, A. [1 ]
机构
[1] Joint Res Ctr, Via Enrico Fermi 2749, I-21027 Ispra, VA, Italy
关键词
QSAR; Skin sensitisation; In vitro; In silico; Prediction; Decision tree; INTEGRATED TESTING STRATEGY; NEURAL-NETWORK ANALYSIS; TEST H-CLAT; IN-VITRO; STRUCTURE/RESPONSE CORRELATIONS; SIMILARITY/DIVERSITY ANALYSIS; MOLECULAR DESCRIPTORS; GETAWAY DESCRIPTORS; PEPTIDE REACTIVITY; POTENCY;
D O I
10.1016/j.tiv.2016.07.014
中图分类号
R99 [毒物学(毒理学)];
学科分类号
100405 ;
摘要
Since March 2013, it is no longer possible to market in the European Union (EU) cosmetics containing new ingredients tested on animals. Although several in silico alternatives are available and achievements have been made in the development and regulatory adoption of skin sensitisation non-animal tests, there is not yet a generally accepted approach for skin sensitisation assessment that would fully substitute the need for animal testing. The aim of this work was to build a defined approach (i.e. a predictive model based on readouts from various information sources that uses a fixed procedure for generating a prediction) for skin sensitisation hazard prediction (sensitiser/non-sensitiser) using Local Lymph Node Assay (LLNA) results as reference classifications. To derive the model, we built a dataset with high quality data from in chemico (DPRA) and in vitro (KeratinoSens (TM) and h-CLAT) methods, and it was complemented with predictions from several software packages. The modelling exercise showed that skin sensitisation hazard was better predicted by classification trees based on in silico predictions. The defined approach consists of a consensus of two classification trees that are based on descriptors that account for protein reactivity and structural features. The model showed an accuracy of 0.93, sensitivity of 0.98, and specificity of 0.85 for 269 chemicals. In addition, the defined approach provides a measure of confidence associated to the prediction. (C) 2016 The Authors. Published by Elsevier Ltd. This is an open access article under the CC BY-NC-ND license.
引用
收藏
页码:197 / 209
页数:13
相关论文
共 69 条
[21]  
EURL-ECVAM, 2014, KER VAL STUD REP
[22]   Quantification of chemical peptide reactivity for screening contact allergens: A classification tree lmodel approach [J].
Gerberick, G. Frank ;
Vassallo, Jeffrey D. ;
Foertsch, Leslie M. ;
Price, Brad B. ;
Chaney, Joel G. ;
Lepoittevin, Jean-Pierre .
TOXICOLOGICAL SCIENCES, 2007, 97 (02) :417-427
[23]   Development of a peptide reactivity assay for screening contact allergens [J].
Gerberick, GF ;
Vassallo, JD ;
Bailey, RE ;
Chaney, JG ;
Morrall, SW ;
Lepoittevin, JP .
TOXICOLOGICAL SCIENCES, 2004, 81 (02) :332-343
[24]  
Goldberg DE., 1989, GENETIC ALGORITHMS S, V1
[25]   Development of a multiparametric in vitro model of skin sensitization [J].
Guyard-Nicodeme, Muriel ;
Gerault, Eloise ;
Platteel, Marion ;
Peschard, Olivier ;
Veron, Wilfried ;
Mondon, Philippe ;
Pascal, Svinareff ;
Feuilloley, Marc G. J. .
JOURNAL OF APPLIED TOXICOLOGY, 2015, 35 (01) :48-58
[26]  
Hall M., 2009, SIGKDD EXPLORATIONS, V11, P10, DOI [DOI 10.1145/1656274.1656278, 10.1145/1656274.1656278]
[27]   Evaluation of combinations of in vitro sensitization test descriptors for the artificial neural network-based risk assessment model of skin sensitization [J].
Hirota, Morihiko ;
Fukui, Shiho ;
Okamoto, Kenji ;
Kurotani, Satoru ;
Imai, Noriyasu ;
Fujishiro, Miyuki ;
Kyotani, Daiki ;
Kato, Yoshinao ;
Kasahara, Toshihiko ;
Fujita, Masaharu ;
Toyoda, Akemi ;
Sekiya, Daisuke ;
Watanabe, Shinichi ;
Seto, Hirokazu ;
Takenouchi, Osamu ;
Ashikaga, Takao ;
Miyazawa, Masaaki .
JOURNAL OF APPLIED TOXICOLOGY, 2015, 35 (11) :1333-1347
[28]   Artificial neural network analysis of data from multiple in vitro assays for prediction of skin sensitization potency of chemicals [J].
Hirota, Morihiko ;
Kouzuki, Hirokazu ;
Ashikaga, Takao ;
Sono, Sakiko ;
Tsujita, Kyoko ;
Sasa, Hitoshi ;
Aiba, Setsuya .
TOXICOLOGY IN VITRO, 2013, 27 (04) :1233-1246
[29]  
Ideaconsult Ltd, 2005, BEH JRC
[30]  
Janezic D., 2007, Graph Theoretical Matrices in Chemistry