Two step resonant Mie scattering correction of infrared micro-spectral data: human lymph node tissue

被引:50
作者
Bird, Benjamin [1 ]
Miljkovic, Milos [1 ]
Diem, Max [1 ]
机构
[1] Northeastern Univ, Chem & Chem Biol Dept, Lab Spectral Diag, Boston, MA 02115 USA
关键词
resonant Mie scattering correction; infrared micro-spectral imaging; breast micro-metastasis; hierarchical cluster analysis; extended multiplicative signal correction; MULTIPLICATIVE SIGNAL CORRECTION; SPECTROSCOPY; CELLS;
D O I
10.1002/jbio.201000024
中图分类号
Q5 [生物化学];
学科分类号
071010 ; 081704 ;
摘要
In this manuscript, we report the application of EMSC to correct infrared micro-spectral data recorded from tissue that describe resonant Mie scattering contributions. Small breast micro-metastases previously undetectable using the raw measured spectra were provided clear contrast from the surrounding tissue after signal correction. The technique also proved transferrable, successfully correcting imaging data sets recorded from multiple patients. It is envisaged more robust methods of supervised analysis can now be constructed to automatically classify and diagnose tissue spectra. [GRAPHICS] Microscopic image of a H&E stained lymph node, and a pseudo-colour infrared image obtained from the same section. The yellow areas co-localise with the breast micro-metastasis apparent in the left panel.
引用
收藏
页码:597 / 608
页数:12
相关论文
共 20 条
[1]  
Adams MJ, 2004, CHEMOMETRICS ANAL SP
[2]  
[Anonymous], 1989, MULTIVARIATE CALIBRA
[3]   Resonant Mie Scattering (RMieS) correction of infrared spectra from highly scattering biological samples [J].
Bassan, Paul ;
Kohler, Achim ;
Martens, Harald ;
Lee, Joe ;
Byrne, Hugh J. ;
Dumas, Paul ;
Gazi, Ehsan ;
Brown, Michael ;
Clarke, Noel ;
Gardner, Peter .
ANALYST, 2010, 135 (02) :268-277
[4]  
Bassan P, 2009, ANALYST, V134, P2484
[5]   Resonant Mie scattering in infrared spectroscopy of biological materials - understanding the 'dispersion artefact' [J].
Bassan, Paul ;
Byrne, Hugh J. ;
Bonnier, Franck ;
Lee, Joe ;
Dumas, Paul ;
Gardner, Peter .
ANALYST, 2009, 134 (08) :1586-1593
[6]   Detection of breast micro-metastases in axillary lymph nodes by infrared micro-spectral imaging [J].
Bird, Benjamin ;
Bedrossian, Kristi ;
Laver, Nora ;
Miljkovic, Milos ;
Romeo, Melissa J. ;
Diem, Max .
ANALYST, 2009, 134 (06) :1067-1076
[7]   Spectral detection of micro-metastases in lymph node histo-pathology [J].
Bird, Benjamin ;
Romeo, Melissa ;
Laver, Nora ;
Diem, Max .
JOURNAL OF BIOPHOTONICS, 2009, 2 (1-2) :37-46
[8]  
DIEM M, 2009, INFRARED RAMAN SPECT, P326
[9]  
Joliffe I.T., 1986, Principal Component Analysis
[10]   Estimating and correcting Mie scattering in synchrotron-based microscopic Fourier transform infrared spectra by extended multiplicative signal correction [J].
Kohler, A. ;
Sule-Suso, J. ;
Sockalingum, G. D. ;
Tobin, M. ;
Bahrami, F. ;
Yang, Y. ;
Pijanka, J. ;
Dumas, P. ;
Cotte, M. ;
van Pittius, D. G. ;
Parkes, G. ;
Martens, H. .
APPLIED SPECTROSCOPY, 2008, 62 (03) :259-266