Transcriptomic analysis of differentially expressed genes in the molting gland (Y-organ) of the blackback land crab, Gecarcinus lateralis, during molt-cycle stage transitions

被引:36
作者
Das, Sunetra [1 ,4 ]
Vraspir, Lindsay [1 ]
Zhou, Wen [2 ]
Durica, David S. [3 ]
Mykles, Donald L. [1 ]
机构
[1] Colorado State Univ, Dept Biol, Ft Collins, CO 80523 USA
[2] Colorado State Univ, Dept Stat, Ft Collins, CO 80523 USA
[3] Univ Oklahoma, Dept Biol, Norman, OK 73019 USA
[4] Colorado State Univ, Dept Clin Sci, Ft Collins, CO 80523 USA
来源
COMPARATIVE BIOCHEMISTRY AND PHYSIOLOGY D-GENOMICS & PROTEOMICS | 2018年 / 28卷
基金
美国国家科学基金会;
关键词
Crustacea; Transcriptome; Ecdysteroid; Y-organ; Molting; mTOR; Transforming growth factor - beta; Autotomy; Molt-inhibiting hormone; Neuropeptide; Cyclic nucleotide; CAMP; cGMP; Myostatin; Activin; Notch; Wnt; MAP kinase; INHIBITING HORMONE MIH; RNA-SEQ DATA; NITRIC-OXIDE; NEUROENDOCRINE REGULATION; GROWTH COORDINATION; MECHANISTIC TARGET; COUPLES NUTRITION; GUANYLYL CYCLASES; TISSUE EXPRESSION; SIGNALING GENES;
D O I
10.1016/j.cbd.2018.06.001
中图分类号
Q5 [生物化学]; Q7 [分子生物学];
学科分类号
071010 ; 081704 ;
摘要
A transcriptome of the Gecarcinus lateralis molting gland (Y-organ or YO) contained 48,590 contiguous sequences (contigs) from intermolt (IM), early premolt (EP), mid premolt (MP), late premolt (LP), and postmolt (PM) stages. The YO is kept in the basal state in IM by molt-inhibiting hormone (MIH)/cyclic nucleotide-dependent signaling. YO activation in EP requires down-regulation of MIH signaling and activation of mechanistic target of rapamycin (mTOR)-dependent protein synthesis. Transition of the YO to the committed state in MP requires activin/transforming growth factor-beta (TGFP) signaling. YO repression occurs at the end of LP. A total of 28,179 contigs (58%) showed molt stage-specific changes in gene expression. The largest number of differentially-expressed genes (DEGs) were at the IM/EP (16,142 contigs), LP/PM (18,161 contigs), and PM/IM (8290 contigs) transitions. By contrast, the numbers of DEGs were 372 and 1502 contigs for the EP/MP and MP/LP transitions, respectively. DEG analysis of 23 signal transduction pathways showed significant changes in MIH, mTOR, activin/TGF beta, Notch, MAP kinase, and Wnt signaling. Down-regulation of MIH signaling genes in pre-molt is consistent with reduced MIH sensitivity in MP and LP. Up-regulation of mTOR signaling genes in IM and premolt stages is consistent with its role in YO activation and sustained ecdysteroidogenesis. Up-regulation of activin/TGF beta signaling genes in EP and MP is consistent with the role of a myostatin/activin-like factor in YO commitment. Notch, MAP kinase, and Wnt DEG analysis may indicate possible crosstalk with the MIH, mTOR, and activin/TGF beta pathways to integrate other inputs to control YO ecdysteroidogenesis.
引用
收藏
页码:37 / 53
页数:17
相关论文
共 90 条
[1]   Roles of mechanistic target of rapamycin and transforming growth factor-β signaling in the molting gland (Y-organ) of the blackback land crab, Gecarcinus lateralis [J].
Abuhagr, Ali M. ;
MacLea, Kyle S. ;
Mudron, Megan R. ;
Chang, Sharon A. ;
Chang, Ernest S. ;
Mykles, Donald L. .
COMPARATIVE BIOCHEMISTRY AND PHYSIOLOGY A-MOLECULAR & INTEGRATIVE PHYSIOLOGY, 2016, 198 :15-21
[2]   Molt regulation in green and red color morphs of the crab Carcinus maenas: gene expression of molt-inhibiting hormone signaling components [J].
Abuhagr, Ali M. ;
Blindert, Jennifer L. ;
Nimitkul, Sukkrit ;
Zander, Ian A. ;
LaBere, Stefan M. ;
Chang, Sharon A. ;
MacLea, Kyle S. ;
Chang, Ernest S. ;
Mykles, Donald L. .
JOURNAL OF EXPERIMENTAL BIOLOGY, 2014, 217 (05) :796-808
[3]   Mechanistic target of rapamycin (mTOR) signaling genes in decapod crustaceans: Cloning and tissue expression of mTOR, Akt, Rheb, and p70 S6 kinase in the green crab, Carcinus maenas, and blackback land crab, Gecarcinus lateralis [J].
Abuhagr, Ali M. ;
MacLea, Kyle S. ;
Chang, Ernest S. ;
Mykles, Donald L. .
COMPARATIVE BIOCHEMISTRY AND PHYSIOLOGY A-MOLECULAR & INTEGRATIVE PHYSIOLOGY, 2014, 168 :25-39
[4]  
AIKEN DE, 1992, REV AQUAT SCI, V6, P335
[5]   Reassessing ecdysteroidogenic cells from the cell membrane receptors' perspective [J].
Alexandratos, Alexandros ;
Moulos, Panagiotis ;
Nellas, Ioannis ;
Mavridis, Konstantinos ;
Dedos, Skarlatos G. .
SCIENTIFIC REPORTS, 2016, 6
[6]   Coordination of organ growth: principles and outstanding questions from the world of insects [J].
Andersen, D. S. ;
Colombani, J. ;
Leopold, P. .
TRENDS IN CELL BIOLOGY, 2013, 23 (07) :336-344
[7]  
Andrews A., 2010, FASTQC QUALITY CONTR
[8]  
[Anonymous], 2015, IEEE INT CONF ROBOT
[9]   Bipartite Recognition of DNA by TCF/Pangolin Is Remarkably Flexible and Contributes to Transcriptional Responsiveness and Tissue Specificity of Wingless Signaling [J].
Archbold, Hilary C. ;
Broussard, Chris ;
Chang, Mikyung V. ;
Cadigan, Ken M. .
PLOS GENETICS, 2014, 10 (09)
[10]   Trimmomatic: a flexible trimmer for Illumina sequence data [J].
Bolger, Anthony M. ;
Lohse, Marc ;
Usadel, Bjoern .
BIOINFORMATICS, 2014, 30 (15) :2114-2120