The complete chloroplast genome sequence of Tussilago farfara (Asteraceae)

被引:0
作者
Yizhong, Duan [1 ,2 ]
Lu, Ke [2 ]
Zhongyu, Du [2 ,3 ,4 ]
Shen, Yehua [1 ]
机构
[1] Northwest Univ, Coll Chem & Mat Sci, Xian 710000, Peoples R China
[2] Yulin Univ, Shaanxi Key Lab Ecol Restorat Northern Shaanxi Mi, Yulin, Peoples R China
[3] Ningxia Univ, Breeding Base State Key Lab Land Degradat & Ecol, Yinchuan, Ningxia, Peoples R China
[4] Chinese Acad Forestry, Res Inst Subtrop Forestry, Fuyang, Peoples R China
来源
MITOCHONDRIAL DNA PART B-RESOURCES | 2022年 / 7卷 / 03期
基金
中国国家自然科学基金;
关键词
Tussilago farfara; complete chloroplast genome; phylogenetic analysis; ORGANIZATION;
D O I
10.1080/23802359.2021.2005494
中图分类号
Q3 [遗传学];
学科分类号
071007 ; 090102 ;
摘要
Tussilago farfara is a member of the family Asteraceae. In this paper, we reported the complete chloroplast (cp) genome sequence of T. farfara. The results showed that T. farfara complete chloroplast genome comprises 151,325 bp, containing a largen single copy (LSC) region of 83,370 bp, a small single copy (SSC) region of 18,273 bp, and a pair of inverted repeats (IRs) region of 24,841 bp. The genome has a GC content of 37.4%. The LSC, SSC, and IR regions represent 35.5%, 30.6%, and 43.0% of the T. farfara chloroplast genome length. We annotated 132 genes, comprising 87 protein-coding genes (PCGs), eight rRNA genes, and 36 tRNA genes. A phylogenetic analysis based on 31 cpDNA genomes suggested that the T. farfara is closely related to Farfugium japonicum.
引用
收藏
页码:528 / 530
页数:3
相关论文
共 10 条
  • [1] THE RETENTION INDEX AND HOMOPLASY EXCESS
    FARRIS, JS
    [J]. SYSTEMATIC ZOOLOGY, 1989, 38 (04): : 406 - 407
  • [2] Tussilago farfara (Asteraceae) in the South of the Far East of Russia
    Fedina, L. A.
    Kuprin, A. V.
    Ogorodnikov, E. M.
    [J]. RUSSIAN JOURNAL OF BIOLOGICAL INVASIONS, 2020, 11 (01) : 88 - 91
  • [3] MAFFT: a novel method for rapid multiple sequence alignment based on fast Fourier transform
    Katoh, K
    Misawa, K
    Kuma, K
    Miyata, T
    [J]. NUCLEIC ACIDS RESEARCH, 2002, 30 (14) : 3059 - 3066
  • [4] Geneious Basic: An integrated and extendable desktop software platform for the organization and analysis of sequence data
    Kearse, Matthew
    Moir, Richard
    Wilson, Amy
    Stones-Havas, Steven
    Cheung, Matthew
    Sturrock, Shane
    Buxton, Simon
    Cooper, Alex
    Markowitz, Sidney
    Duran, Chris
    Thierer, Tobias
    Ashton, Bruce
    Meintjes, Peter
    Drummond, Alexei
    [J]. BIOINFORMATICS, 2012, 28 (12) : 1647 - 1649
  • [5] Kumar S, 2016, MOL BIOL EVOL, V33, P1870, DOI [10.1093/molbev/msw054, 10.1093/molbev/msv279]
  • [6] OrganellarGenomeDRAW-a suite of tools for generating physical maps of plastid and mitochondrial genomes and visualizing expression data sets
    Lohse, Marc
    Drechsel, Oliver
    Kahlau, Sabine
    Bock, Ralph
    [J]. NUCLEIC ACIDS RESEARCH, 2013, 41 (W1) : W575 - W581
  • [7] The complete chloroplast genome sequence of Artemisia ordosica
    Lu, Ke
    Mao, Wei
    Du, Zhongyu
    He, Yiming
    Fan, Cheng
    Zhang, Kai
    Wang, Lijun
    Liu, Guoming
    Duan, Yizhong
    [J]. MITOCHONDRIAL DNA PART B-RESOURCES, 2020, 5 (02): : 1663 - 1664
  • [8] THE COMPLETE NUCLEOTIDE-SEQUENCE OF THE TOBACCO CHLOROPLAST GENOME - ITS GENE ORGANIZATION AND EXPRESSION
    SHINOZAKI, K
    OHME, M
    TANAKA, M
    WAKASUGI, T
    HAYASHIDA, N
    MATSUBAYASHI, T
    ZAITA, N
    CHUNWONGSE, J
    OBOKATA, J
    YAMAGUCHISHINOZAKI, K
    OHTO, C
    TORAZAWA, K
    MENG, BY
    SUGITA, M
    DENO, H
    KAMOGASHIRA, T
    YAMADA, K
    KUSUDA, J
    TAKAIWA, F
    KATO, A
    TOHDOH, N
    SHIMADA, H
    SUGIURA, M
    [J]. EMBO JOURNAL, 1986, 5 (09) : 2043 - 2049
  • [9] Bioactive sesquiterpenoids from the flower buds of Tussilago farfara
    Song, Xiu-Qing
    Yu, Jin-Hai
    Sun, Jia
    Liu, Kai-Lu
    Zhang, Jun-Sheng
    Zhang, Hua
    [J]. BIOORGANIC CHEMISTRY, 2021, 107
  • [10] Prenylated indole alkaloids and lignans from the flower buds of Tussilago farfara
    Song, Xiu-Qing
    Sun, Jia
    Yu, Jin-Hai
    Zhang, Jun-Sheng
    Bao, Jie
    Zhang, Hua
    [J]. FITOTERAPIA, 2020, 146