Insights into host responses against pathogens from transcriptional profiling

被引:437
作者
Jenner, RG
Young, RA
机构
[1] Whitehead Inst Biomed Res, Cambridge, MA 02142 USA
[2] MIT, Dept Biol, Cambridge, MA 02139 USA
[3] MIT, Broad Inst, Cambridge, MA 02139 USA
[4] Harvard Univ, Cambridge, MA 02139 USA
关键词
D O I
10.1038/nrmicro1126
中图分类号
Q93 [微生物学];
学科分类号
071005 ; 100705 ;
摘要
DNA microarrays have allowed us to monitor the effects of pathogens on host-cell gene expression programmes in great depth and on a broad scale. The comparison of results that have been generated by these studies is complex, and such a comparison has not previously been attempted in a systematic manner. In this review, we have collated and compared published transcriptional-profiling data from 32 studies that involved 77 different host-pathogen interactions, and have defined a common host-transcriptional-response. We outline gene expression patterns in the context of Toll-like receptor and pathogen-mediated signalling pathways, and summarize the contributions that transcriptional-profiling studies have made to our understanding of the infectious disease process.
引用
收藏
页码:281 / 294
页数:14
相关论文
共 91 条
[51]   Kaposi's sarcoma-associated herpesvirus-induced upregulation of the c-kit proto-oncogene, as identified by gene expression profiling, is essential for the transformation of endothelial cells [J].
Moses, AV ;
Jarvis, MA ;
Raggo, C ;
Bell, YC ;
Ruhl, R ;
Luukkonen, BGM ;
Griffith, DJ ;
Wait, CL ;
Druker, BJ ;
Heinrich, MC ;
Nelson, JA ;
Früh, K .
JOURNAL OF VIROLOGY, 2002, 76 (16) :8383-8399
[52]   Herpes simplex virus triggers and then disarms a host antiviral response [J].
Mossman, KL ;
Macgregor, PF ;
Rozmus, JJ ;
Goryachev, AB ;
Edwards, AM ;
Smiley, JR .
JOURNAL OF VIROLOGY, 2001, 75 (02) :750-758
[53]   Protective immunity against Helicobacter is characterized by a unique transcriptional signature [J].
Mueller, A ;
O'Rourke, J ;
Chu, P ;
Kim, CC ;
Sutton, P ;
Lee, A ;
Falkow, S .
PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA, 2003, 100 (21) :12289-12294
[54]   Distinct gene expression profiles characterize the histopathological stages of disease in Helicobacter-induced mucosa-associated lymphoid tissue lymphoma [J].
Mueller, A ;
O'Rourke, J ;
Grimm, J ;
Guillemin, K ;
Dixon, MF ;
Lee, A ;
Falkow, S .
PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA, 2003, 100 (03) :1292-1297
[55]   Human macrophage activation programs induced by bacterial pathogens [J].
Nau, GJ ;
Richmond, JFL ;
Schlesinger, A ;
Jennings, EG ;
Lander, ES ;
Young, RA .
PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA, 2002, 99 (03) :1503-1508
[56]   Cumulative toll-like receptor activation in human macrophages treated with whole bacteria [J].
Nau, GJ ;
Schlesinger, A ;
Richmond, JFL ;
Young, RA .
JOURNAL OF IMMUNOLOGY, 2003, 170 (10) :5203-5209
[57]   Papillomavirus type 16 oncogenes downregulate expression of interferon-responsive genes and upregulate proliferation-associated and NF-κB-responsive genes in cervical keratinocytes [J].
Nees, M ;
Geoghegan, JM ;
Hyman, T ;
Frank, S ;
Miller, L ;
Woodworth, CD .
JOURNAL OF VIROLOGY, 2001, 75 (09) :4283-4296
[58]   Control of pancreas and liver gene expression by HNF transcription factors [J].
Odom, DT ;
Zizlsperger, N ;
Gordon, DB ;
Bell, GW ;
Rinaldi, NJ ;
Murray, HL ;
Volkert, TL ;
Schreiber, J ;
Rolfe, PA ;
Gifford, DK ;
Fraenkel, E ;
Bell, GI ;
Young, RA .
SCIENCE, 2004, 303 (5662) :1378-1381
[59]  
Okabe H, 2001, CANCER RES, V61, P2129
[60]   A role for toll-like receptor 4 in dendritic cell activation and cytolytic CD8+T cell differentiation in response to a recombinant heat shock fusion protein [J].
Palliser, D ;
Huang, Q ;
Hacohen, N ;
Lamontagne, SP ;
Guillen, E ;
Young, RA ;
Eisen, HN .
JOURNAL OF IMMUNOLOGY, 2004, 172 (05) :2885-2893