Highlighting Link Prediction in Bipartite Networks via Structural Perturbation

被引:5
作者
Chen, Xue [1 ]
Wang, Wenjun [1 ]
Yu, Wei [1 ]
Jiao, Pengfei [2 ]
Sun, Yueheng [1 ]
机构
[1] Tianjin Univ, Coll Intelligence & Comp, Tianjin 300072, Peoples R China
[2] Tianjin Univ, Ctr Biosafety Res & Strategy, Tianjin 300072, Peoples R China
来源
IEEE ACCESS | 2018年 / 6卷
基金
国家重点研发计划; 中国国家自然科学基金;
关键词
Link prediction; bipartite networks; structural perturbation; singular vectors; singular values;
D O I
10.1109/ACCESS.2018.2883436
中图分类号
TP [自动化技术、计算机技术];
学科分类号
0812 ;
摘要
Most of the link prediction algorithms for bipartite networks assume that the generation of link is based on a predefined prior assumption. However, for the real-world bipartite networks, the generation mechanism of link is still ambiguous due to their complexity. Consequently, these methods are not always obtaining satisfactory results in all the cases, as each network has its unique generation mechanisms of link. In this paper, by introducing the structure perturbation theory, we propose a non-parameter bipartite structural perturbation method (BiSPM) to predict unobserved links without making any assumption for link formation mechanism. We first make a small perturbation for the training set of a bipartite network. Then for the perturbed network, we use singular value decomposition to obtain the singular vectors and singular values. Finally, during the process of network reconstruction, we hypothesize that when the topological structure meets tiny disturbance in the bipartite network, the coordinate system (singular vectors) of the projection is invariant, but the scaling factors (singular values) will create a tiny change from the perspective of complex system stability. Thus, a new matrix is constructed for prediction by changing the singular values of the perturbed networks while fixing the singular vectors. Extensive experiments on a variety of real-world bipartite networks show that BiSPM achieves a more competitive and more robust performance in comparison with the state-of-art link prediction methods in bipartite networks.
引用
收藏
页码:73583 / 73592
页数:10
相关论文
共 38 条
  • [31] Link prediction via matrix completion[J]. Pech, Ratha;Hao, Dong;Pan, Liming;Cheng, Hong;Zhou, Tao. EPL, 2017(03)
  • [32] Plasmodium falciparum Erythrocyte Membrane Protein 1 Diversity in Seven Genomes - Divide and Conquer[J]. Rask, Thomas S.;Hansen, Daniel A.;Theander, Thor G.;Pedersen, Anders Gorm;Lavstsen, Thomas. PLOS COMPUTATIONAL BIOLOGY, 2010(09)
  • [33] Similarity-based Regularized Latent Feature Model for Link Prediction in Bipartite Networks[J]. Wang, Wenjun;Chen, Xue;Jiao, Pengfei;Jin, Di. SCIENTIFIC REPORTS, 2017
  • [34] Kernel framework based on non-negative matrix factorization for networks reconstruction and link prediction[J]. Wang, Wenjun;Feng, Yiding;Jiao, Pengfei;Yu, Wei. KNOWLEDGE-BASED SYSTEMS, 2017
  • [35] Prediction of drug-target interaction networks from the integration of chemical and genomic spaces[J]. Yamanishi, Yoshihiro;Araki, Michihiro;Gutteridge, Alex;Honda, Wataru;Kanehisa, Minoru. BIOINFORMATICS, 2008(13)
  • [36] DINIES: drug-target interaction network inference engine based on supervised analysis[J]. Yamanishi, Yoshihiro;Kotera, Masaaki;Moriya, Yuki;Sawada, Ryusuke;Kanehisa, Minoru;Goto, Susumu. NUCLEIC ACIDS RESEARCH, 2014(W1)
  • [37] Using Random Walks to Generate Associations between Objects[J]. Yildirim, Muhammed A.;Coscia, Michele. PLOS ONE, 2014(08)
  • [38] Bipartite network projection and personal recommendation[J]. Zhou, Tao;Ren, Jie;Medo, Matus;Zhang, Yi-Cheng. PHYSICAL REVIEW E, 2007(04)