Label-free detection of T4 DNA ligase and polynucleotide kinase activity based on toehold-mediated strand displacement and split G-quadruplex probes

被引:40
作者
Guo, Yahui [1 ,2 ]
Wang, Qinglin [2 ]
Wang, Zhili [2 ]
Chen, Xing [2 ]
Xu, Lijun [2 ]
Hu, Jiming [1 ]
Pei, Renjun [2 ]
机构
[1] Wuhan Univ, Coll Chem & Mol Sci, Minist Educ, Key Lab Analyt Chem Biol & Med, Wuhan, Peoples R China
[2] Chinese Acad Sci, Suzhou Inst Nanotech & Nanobion, Div Nanobiomed, Key Lab Nanobio Interface, Suzhou 215123, Peoples R China
基金
中国国家自然科学基金;
关键词
DNA ligase; Polynucleotide kinase; Label free; Toehold-mediated strand displacement; Split G-quadruplex; ROLLING CIRCLE AMPLIFICATION; LAMBDA EXONUCLEASE CLEAVAGE; AMPLIFIED DETECTION; ELECTROCHEMICAL DETECTION; CASCADE AMPLIFICATION; NUCLEIC-ACID; FLUORESCENCE; INHIBITION; LIGATION; BIOSENSOR;
D O I
10.1016/j.snb.2015.03.013
中图分类号
O65 [分析化学];
学科分类号
070302 ; 081704 ;
摘要
Herein, an efficient pair of split G-quadruplex probes was selected (S/N= 21) to construct a simple, rapid and label-free technique for the detections of T4 DNA ligase and PNK activity. DNA ligase and PNK are engaged in DNA replication and repair, ensuring the genetic stability. The detections of T4 ligase and PNK activity are of great significance in biology and biomedicine. Split G-quadruplex probes are robust label-free biosensing tools with turn-on signal readout. The selected pair of split G-quadruplex probes combined with toehold-mediated strand displacement in this work demonstrated an efficient strategy for monitoring the activities of T4 DNA ligase and PNK with good sensitivity. (C) 2015 Elsevier B.V. All rights reserved.
引用
收藏
页码:50 / 55
页数:6
相关论文
共 53 条
[1]   Fluorescent dyes specific for quadruplex DNA [J].
Arthanari, H ;
Basu, S ;
Kawano, TL ;
Bolton, PH .
NUCLEIC ACIDS RESEARCH, 1998, 26 (16) :3724-3728
[2]   The molecular architecture of the mammalian DNA repair enzyme, polynucleotide kinase [J].
Bernstein, NK ;
Williams, RS ;
Rakovszky, ML ;
Cui, D ;
Green, R ;
Karimi-Busheri, F ;
Mani, RS ;
Galicia, S ;
Koch, CA ;
Cass, CE ;
Durocher, D ;
Weinfeld, M ;
Glover, JNM .
MOLECULAR CELL, 2005, 17 (05) :657-670
[3]   One-step highly sensitive florescence detection of T4 polynucleotide kinase activity and biological small molecules by ligation-nicking coupled reaction-mediated signal amplification [J].
Chen, Feng ;
Zhao, Yongxi ;
Qi, Lin ;
Fan, Chunhai .
BIOSENSORS & BIOELECTRONICS, 2013, 47 :218-224
[4]   Chemiluminescent and Chemiluminescence Resonance Energy Transfer (CRET) Detection of DNA, Metal Ions, and Aptamer-Substrate Complexes Using Hemin/G-Quadruplexes and CdSe/ZnS Quantum Dots [J].
Freeman, Ronit ;
Liu, Xiaoqing ;
Willner, Itamar .
JOURNAL OF THE AMERICAN CHEMICAL SOCIETY, 2011, 133 (30) :11597-11604
[5]   Label-Free Logic Modules and Two-Layer Cascade Based on Stem-Loop Probes Containing a G-Quadruplex Domain [J].
Guo, Yahui ;
Cheng, Junjie ;
Wang, Jine ;
Zhou, Xiaodong ;
Hu, Jiming ;
Pei, Renjun .
CHEMISTRY-AN ASIAN JOURNAL, 2014, 9 (09) :2397-2401
[6]   A label-free biosensor for DNA detection based on ligand-responsive G-quadruplex formation [J].
Guo, Yahui ;
Xu, Pei ;
Hu, Hui ;
Zhou, Xiaodong ;
Hu, Jiming .
TALANTA, 2013, 114 :138-142
[7]   Label-free luminescence switch-on detection of T4 polynucleotide kinase activity using a G-quadruplex-selective probe [J].
He, Hong-Zhang ;
Leung, Ka-Ho ;
Wang, Wei ;
Chan, Daniel Shiu-Hin ;
Leung, Chung-Hang ;
Ma, Dik-Lung .
CHEMICAL COMMUNICATIONS, 2014, 50 (40) :5313-5315
[8]   G-quadruplexes for luminescent sensing and logic gates [J].
He, Hong-Zhang ;
Chan, Daniel Shiu-Hin ;
Leung, Chung-Hang ;
Ma, Dik-Lung .
NUCLEIC ACIDS RESEARCH, 2013, 41 (08) :4345-4359
[9]   A highly selective G-quadruplex-based luminescent switch-on probe for the detection of gene deletion [J].
He, Hong-Zhang ;
Chan, Daniel Shiu-Hin ;
Leung, Chung-Hang ;
Ma, Dik-Lung .
CHEMICAL COMMUNICATIONS, 2012, 48 (76) :9462-9464
[10]  
He K., 2012, CHEMISTRY, V18, P3992