Quantifying Temporal Genomic Erosion in Endangered Species

被引：141

作者：

Diez-del-Molino, David ^{[1
]}

Sanchez-Barreiro, Fatima ^{[2
]}

Barnes, Ian ^{[3
]}

Gilbert, M. Thomas P. ^{[2
,4
]}

Dalen, Love ^{[1
]}

机构：

[1] Swedish Museum Nat Hist, Dept Bioinformat & Genet, S-10405 Stockholm, Sweden

[2] Univ Copenhagen, Nat Hist Museum Denmark, DK-1350 Copenhagen, Denmark

[3] Nat Hist Museum, Cromwell Rd, London SW7 5BD, England

[4] Norwegian Univ Sci & Technol, Univ Museum, N-7491 Trondheim, Norway

来源：

TRENDS IN ECOLOGY & EVOLUTION | 2018年 / 33卷 / 03期

关键词：

GENERATION SEQUENCING DATA; INBREEDING DEPRESSION; ANCIENT DNA; GENETIC DIVERSITY; POPULATION GENOMICS; MISCODING LESIONS; WILD POPULATIONS; EXTINCTION RISK; CONSERVATION; HOMOZYGOSITY;

D O I：

10.1016/j.tree.2017.12.002

中图分类号：

Q14 [生态学（生物生态学）];

学科分类号：

071012 ; 0713 ;

摘要：

Many species have undergone dramatic population size declines over the past centuries. Although stochastic genetic processes during and after such declines are thought to elevate the risk of extinction, comparative analyses of genomic data from several endangered species suggest little concordance between genome-wide diversity and current population sizes. This is likely because species-specific life-history traits and ancient bottlenecks overshadow the genetic effect of recent demographic declines. Therefore, we advocate that temporal sampling of genomic data provides a more accurate approach to quantify genetic threats in endangered species. Specifically, genomic data from predecline museum specimens will provide valuable baseline data that enable accurate estimation of recent decreases in genome-wide diversity, increases in inbreeding levels, and accumulation of deleterious genetic variation.

引用

页码：176 / 185

页数：10

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