THREE DIMENSIONAL SEGMENTATION OF FLUORESCENCE MICROSCOPY IMAGES USING ACTIVE SURFACES

被引:0
作者
Lorenz, Kevin S. [1 ]
Salama, Paul [2 ]
Dunn, Kenneth W. [3 ]
Delp, Edward J. [1 ]
机构
[1] Purdue Univ, Sch Elect & Comp Engn, Video & Image Proc Lab, W Lafayette, IN 47907 USA
[2] Indiana Univ, Dept Elect & Comp Engn, Indianapolis, IN 46202 USA
[3] Indiana Univ Sch Med, Div Nephrol, Indianapolis, IN 46202 USA
来源
2013 20TH IEEE INTERNATIONAL CONFERENCE ON IMAGE PROCESSING (ICIP 2013) | 2013年
关键词
image segmentation; biomedical optical imaging; optical microscopy; LEVEL SET FRAMEWORK; CONTOURS; MODEL; GRADIENT; CELLS; EDGES;
D O I
暂无
中图分类号
TB8 [摄影技术];
学科分类号
0804 ;
摘要
Three dimensional image volumes collected using optical microscopy exhibit many characteristics that cause difficulty in segmentation. These include decreasing image contrast with increasing tissue depth, poor edge detail with regard to cellular structures, and limited spatial resolution. This paper describes a three dimensional segmentation method utilizing active surfaces to segment microscopy image volumes. We demonstrate this method on a three dimensional sequence of images acquired from stationary/stabilized kidney tissue of a rat. Results from this method are compared against a prior pseudo-three dimensional segmentation method that analyzes slices on a single image-by-image basis, as well as against another native three dimensional segmentation method.
引用
收藏
页码:1153 / 1157
页数:5
相关论文
共 50 条
[21]   Segmentation of Three-Dimensional Images of the Butterfly Wing Surface [J].
Garczyk, Zaneta ;
Stach, Sebastian ;
Talu, Stefan ;
Dinara, Sobola ;
Wrobel, Zygmunt .
INFORMATION TECHNOLOGY IN BIOMEDICINE (ITIB 2018), 2019, 762 :111-121
[22]   Three-dimensional imaging on a chip using optofluidics light-sheet fluorescence microscopy [J].
Vargas-Ordaz, Erick J. ;
Gorelick, Sergey ;
York, Harrison M. ;
Liu, Bonan ;
Halls, Michelle L. ;
Arumugam, Senthil ;
Neild, Adrian ;
de Marco, Alex ;
Cadarso, Victor J. .
LAB ON A CHIP, 2021, 21 (15) :2945-2954
[23]   Segmentation of medical ultrasound images using active contours [J].
Michailovich, Oleg ;
Tannenbaum, Allen .
2007 IEEE INTERNATIONAL CONFERENCE ON IMAGE PROCESSING, VOLS 1-7, 2007, :2765-+
[24]   Segmentation of drosophila RNAi fluorescence images using level sets [J].
Xiong, Guanglei ;
Zhou, Xiaobo ;
Ji, Liang ;
Bradle, Painela ;
Perrimon, Norbert ;
Wong, Stephen .
2006 IEEE INTERNATIONAL CONFERENCE ON IMAGE PROCESSING, ICIP 2006, PROCEEDINGS, 2006, :73-+
[25]   Segmentation of breast ultrasound images based on active contours using neutrosophic theory [J].
Lotfollahi, Mahsa ;
Gity, Masoumeh ;
Ye, Jing Yong ;
Far, A. Mahlooji .
JOURNAL OF MEDICAL ULTRASONICS, 2018, 45 (02) :205-212
[26]   Quantitative segmentation of fluorescence microscopy images of heterogeneous tissue: Approach for tuning algorithm parameters [J].
Mueller, Jenna L. ;
Harmany, Zachary T. ;
Mito, Jeffrey K. ;
Kennedy, Stephanie A. ;
Kim, Yongbaek ;
Dodd, Leslie ;
Geradts, Joseph ;
Kirsch, David G. ;
Willett, Rebecca M. ;
Brown, J. Quincy ;
Ramanujam, Nimmi .
IMAGING, MANIPULATION, AND ANALYSIS OF BIOMOLECULES, CELLS, AND TISSUES XI, 2013, 8587
[27]   NUCLEI SEGMENTATION OF FLUORESCENCE MICROSCOPY IMAGES BASED ON MIDPOINT ANALYSIS AND MARKED POINT PROCESS [J].
Gadgil, Neeraj J. ;
Salama, Paul ;
Dunn, Kenneth W. ;
Delp, Edward J. .
2016 IEEE SOUTHWEST SYMPOSIUM ON IMAGE ANALYSIS AND INTERPRETATION (SSIAI), 2016, :37-40
[28]   Active Region Approach for Segmentation of Medical Images [J].
Tracz, Pawel ;
Szczepaniak, Piotr S. .
ARTIFICIAL INTELLIGENCE AND SOFT COMPUTING, ICAISC 2014, PT II, 2014, 8468 :195-206
[29]   An Automated Approach for Kidney Segmentation in Three-Dimensional Ultrasound Images [J].
Marsousi, Mahdi ;
Plataniotis, Konstantinos N. ;
Stergiopoulos, Stergios .
IEEE JOURNAL OF BIOMEDICAL AND HEALTH INFORMATICS, 2017, 21 (04) :1079-1094
[30]   Quantitative Analysis of Three-Dimensional Fluorescence Localization Microscopy Data [J].
Owen, Dylan M. ;
Williamson, David J. ;
Boelen, Lies ;
Magenau, Astrid ;
Rossy, Jeremie ;
Gaus, Katharina .
BIOPHYSICAL JOURNAL, 2013, 105 (02) :L05-L7