The influence of curvature on the properties of the plasma membrane. Insights from atomistic molecular dynamics simulations

被引:64
|
作者
Yesylevskyy, Semen O. [1 ]
Rivel, Timothee [2 ]
Ramseyer, Christophe [2 ]
机构
[1] Natl Acad Sci Ukraine, Inst Phys, Dept Phys Biol Syst, Prospect Nauky 46, UA-03680 Kiev, Ukraine
[2] Univ Bourgogne Franche Comte, CNRS, Lab Chrono Environm, UMR 6249, 16 Route Gray, F-25030 Besancon, France
来源
SCIENTIFIC REPORTS | 2017年 / 7卷
关键词
COARSE-GRAINED MODEL; FORCE-FIELD; PHOSPHOLIPID ASYMMETRY; LIPID-BILAYERS; CHOLESTEROL; VESICLES; LIBRARY; FAT;
D O I
10.1038/s41598-017-16450-x
中图分类号
O [数理科学和化学]; P [天文学、地球科学]; Q [生物科学]; N [自然科学总论];
学科分类号
07 ; 0710 ; 09 ;
摘要
In this work we conduct a systematic analysis of the influence of curvature on various properties of a realistic model of mammalian plasma membrane with asymmetric lipid content of monolayers and a realistic concentration of cholesterol. In order to do this we developed new technique for simulating membranes with the global membrane curvature restricted to any desirable value while keeping free lateral diffusion of the lipids and without introducing artifacts or perturbing the membrane structure. We show that the thickness of the hydrophobic core of the concave monolayer decreases by approximately 1.3 angstrom in comparison to that of the flat membrane, while the thickness of the convex monolayer does not change. The order parameter of the lipid tails decreases significantly in the certain layers of the curved membrane. The area per lipid increases in the convex monolayer and decreases in the concave monolayer. The cholesterol inclination angle decreases when the curvature of a particular monolayer changes from concave to convex. The amount of cholesterol in the minor fraction located between the membrane leaflets is zero in the membrane with positive curvature and increases to 1.7% in the flat membrane and to 2.5% in the membrane with negative curvature.
引用
收藏
页数:13
相关论文
共 50 条
  • [31] The biophysical properties of ethanolamine plasmalogens revealed by atomistic molecular dynamics simulations
    Rog, Tomasz
    Koivuniemi, Artturi
    BIOCHIMICA ET BIOPHYSICA ACTA-BIOMEMBRANES, 2016, 1858 (01): : 97 - 103
  • [32] Molecular dynamics simulation of DPPC Cholesterol membrane.
    Smondyrev, AM
    Berkowitz, ML
    BIOPHYSICAL JOURNAL, 1999, 76 (01) : A62 - A62
  • [33] Bacterial Outer Membrane Vesicle Interaction with Plasma Membranes: Insights from Molecular Simulations
    Jefferies, Damien F.
    Duncan, Anna L.
    Khalid, Syma
    BIOPHYSICAL JOURNAL, 2019, 116 (03) : 180A - 180A
  • [34] Fluorescent membrane probes' behavior in lipid bilayers: Insights from molecular dynamics simulations
    Loura L.M.S.
    Prates Ramalho J.P.
    Biophysical Reviews, 2009, 1 (3) : 141 - 148
  • [35] Anesthetics mechanism on a DMPC lipid membrane model: Insights from molecular dynamics simulations
    Saeedi, Marzieh
    Lyubartsev, Alexander P.
    Jalili, Seifollah
    BIOPHYSICAL CHEMISTRY, 2017, 226 : 1 - 13
  • [36] New Insights into the Membrane Mechanism of Action of Amphotericin B from Molecular Dynamics Simulations
    Neumann, Anna
    Czub, Jacek
    Baginski, Maciej
    BIOPHYSICAL JOURNAL, 2012, 102 (03) : 96A - 96A
  • [37] Mechanical Properties of Type I Collagen: Insights From Molecular Dynamics Simulations
    Tumaneng, Paul
    Zhao, Guijun
    Antipova, Olga
    Orgel, Joseph P. R. O.
    Varma, Sameer
    Scott, H. Larry
    BIOPHYSICAL JOURNAL, 2011, 100 (03) : 48 - 48
  • [38] The mechanical properties of irradiated concrete aggregates: Insights from molecular dynamics simulations
    Fujimura, Takayoshi
    Hakozaki, Yuji
    Sakuragi, Shunsuke
    Nakajima, Yuu
    Murakami, Kenta
    Suzuki, Kiyoteru
    Maruyama, Ippei
    Ohkubo, Takahiro
    JOURNAL OF THE AMERICAN CERAMIC SOCIETY, 2025, 108 (04)
  • [39] Hugoniot properties of porous stainless steel: Insights from molecular dynamics simulations
    Pham, C. Huy
    Lorenzana, Hector E.
    Belof, Jonathan L.
    Goldman, Nir
    JOURNAL OF APPLIED PHYSICS, 2023, 134 (04)
  • [40] Atomistic molecular dynamics simulations of gasdermin pores
    Schaefer, Stefan
    Schaefer, Stefan
    EUROPEAN BIOPHYSICS JOURNAL WITH BIOPHYSICS LETTERS, 2023, 52 (SUPPL 1): : S154 - S154