The influence of curvature on the properties of the plasma membrane. Insights from atomistic molecular dynamics simulations

被引:65
|
作者
Yesylevskyy, Semen O. [1 ]
Rivel, Timothee [2 ]
Ramseyer, Christophe [2 ]
机构
[1] Natl Acad Sci Ukraine, Inst Phys, Dept Phys Biol Syst, Prospect Nauky 46, UA-03680 Kiev, Ukraine
[2] Univ Bourgogne Franche Comte, CNRS, Lab Chrono Environm, UMR 6249, 16 Route Gray, F-25030 Besancon, France
来源
SCIENTIFIC REPORTS | 2017年 / 7卷
关键词
COARSE-GRAINED MODEL; FORCE-FIELD; PHOSPHOLIPID ASYMMETRY; LIPID-BILAYERS; CHOLESTEROL; VESICLES; LIBRARY; FAT;
D O I
10.1038/s41598-017-16450-x
中图分类号
O [数理科学和化学]; P [天文学、地球科学]; Q [生物科学]; N [自然科学总论];
学科分类号
07 ; 0710 ; 09 ;
摘要
In this work we conduct a systematic analysis of the influence of curvature on various properties of a realistic model of mammalian plasma membrane with asymmetric lipid content of monolayers and a realistic concentration of cholesterol. In order to do this we developed new technique for simulating membranes with the global membrane curvature restricted to any desirable value while keeping free lateral diffusion of the lipids and without introducing artifacts or perturbing the membrane structure. We show that the thickness of the hydrophobic core of the concave monolayer decreases by approximately 1.3 angstrom in comparison to that of the flat membrane, while the thickness of the convex monolayer does not change. The order parameter of the lipid tails decreases significantly in the certain layers of the curved membrane. The area per lipid increases in the convex monolayer and decreases in the concave monolayer. The cholesterol inclination angle decreases when the curvature of a particular monolayer changes from concave to convex. The amount of cholesterol in the minor fraction located between the membrane leaflets is zero in the membrane with positive curvature and increases to 1.7% in the flat membrane and to 2.5% in the membrane with negative curvature.
引用
收藏
页数:13
相关论文
共 50 条
  • [21] Interactions between Rhodamine Dyes and Model Membrane Systems-Insights from Molecular Dynamics Simulations
    Magalhaes, Nisa
    Simoes, Guilherme M.
    Ramos, Cristiana
    Samelo, Jaime
    Oliveira, Alexandre C.
    Filipe, Hugo A. L.
    Ramalho, Joao P. Prates
    Moreno, Maria Joao
    Loura, Luis M. S.
    MOLECULES, 2022, 27 (04):
  • [22] Molecular dynamics simulations of cancer cell membrane electroporation under the plasma electric field effect
    Wang, Huichao
    Zhao, Tong
    Wang, Zichen
    Wang, Xiaolong
    Wang, Daohan
    Zhang, Yuantao
    PLASMA PROCESSES AND POLYMERS, 2023, 20 (02)
  • [23] Insights into Membrane Translocation of Protegrin Antimicrobial Peptides by Multistep Molecular Dynamics Simulations
    Lai, Pin-Kuang
    Kaznessis, Yiannis N.
    ACS OMEGA, 2018, 3 (06): : 6056 - 6065
  • [24] Insights into Noncovalent Binding Obtained from Molecular Dynamics Simulations
    Baz, Joerg
    Gebhardt, Julia
    Kraus, Hamzeh
    Markthaler, Daniel
    Hansen, Niels
    CHEMIE INGENIEUR TECHNIK, 2018, 90 (11) : 1864 - 1875
  • [25] Ice formation on kaolinite: Insights from molecular dynamics simulations
    Sosso, Gabriele C.
    Tribello, Gareth A.
    Zen, Andrea
    Pedevilla, Philipp
    Michaelides, Angelos
    JOURNAL OF CHEMICAL PHYSICS, 2016, 145 (21)
  • [26] Curvature effect and stabilize ruptured membrane of BAX derived peptide studied by molecular dynamics simulations
    Jiang, Zhenyan
    Zhang, Hansi
    JOURNAL OF MOLECULAR GRAPHICS & MODELLING, 2019, 88 : 152 - 159
  • [27] Examining the Effect of Charged Lipids on Mitochondrial Outer Membrane Dynamics Using Atomistic Simulations
    Oliveira, Aline A.
    Rog, Tomasz
    da Silva, Alberico B. F.
    Amaro, Rommie E.
    Johnson, Mark S.
    Postila, Pekka A.
    BIOMOLECULES, 2022, 12 (02)
  • [28] Molecular Dynamics Simulations of Membrane-Sugar Interactions
    Kapla, Jon
    Wohlert, Jakob
    Stevensson, Baltzar
    Engstrom, Olof
    Widmalm, Goran
    Maliniak, Arnold
    JOURNAL OF PHYSICAL CHEMISTRY B, 2013, 117 (22) : 6667 - 6673
  • [29] Two sterols, two bilayers: insights on membrane structure from molecular dynamics
    Monje-Galvan, Viviana
    Klauda, Jeffery B.
    MOLECULAR SIMULATION, 2017, 43 (13-16) : 1179 - 1188
  • [30] Molecular dynamics simulations of phenolic resin: Construction of atomistic models
    Monk, Joshua D.
    Haskins, Justin B.
    Bauschlicher, Charles W., Jr.
    Lawson, John W.
    POLYMER, 2015, 62 : 39 - 49