Wavelet transformation can enhance computed tomography texture features: a multicenter radiomics study for grade assessment of COVID-19 pulmonary lesions

被引:28
作者
Jiang, Zekun [1 ,2 ,3 ]
Yin, Jin [1 ]
Han, Peilun [1 ,2 ,3 ]
Chen, Nan [4 ]
Kang, Qingbo [1 ,2 ,3 ]
Qiu, Yue [1 ,2 ,3 ]
Li, Yiyue [1 ,2 ,3 ]
Lao, Qicheng [1 ,2 ,3 ,5 ]
Sun, Miao [1 ,6 ]
Yang, Dan [7 ]
Huang, Shan [7 ]
Qiu, Jiajun [1 ,9 ]
Li, Kang [1 ,2 ,3 ,5 ,8 ,9 ]
机构
[1] Sichuan Univ, West China Hosp, West China Biomed Big Data Ctr, Chengdu, Peoples R China
[2] Sichuan Univ, Med X Ctr Informat, Chengdu, Peoples R China
[3] West China Hosp, Sense Time Joint Lab, Chengdu, Peoples R China
[4] Sichuan Univ, West China Hosp, Dept Thorac Surg, Chengdu, Peoples R China
[5] Shanghai Artificial Intelligence Lab, Shanghai, Peoples R China
[6] Sichuan Univ, Coll Elect Engn, Chengdu, Peoples R China
[7] Sichuan Univ, West China Hosp, Dept Radiol, Chengdu, Peoples R China
[8] Sichuan Univ, Sichuan Univ Pittsburgh Inst, Chengdu, Peoples R China
[9] Sichuan Univ, West China Hosp, West China Biomed Big Data Ctr, 37 Guoxue Alley, Chengdu 610000, Peoples R China
关键词
COVID-19; computed tomography (CT); machine learning; quantitative image analysis; radiomics; MODELS;
D O I
10.21037/qims-22-252
中图分类号
R8 [特种医学]; R445 [影像诊断学];
学科分类号
1002 ; 100207 ; 1009 ;
摘要
Background: This study set out to develop a computed tomography (CT)-based wavelet transforming radiomics approach for grading pulmonary lesions caused by COVID-19 and to validate it using real-world data.Methods: This retrospective study analyzed 111 patients with 187 pulmonary lesions from 16 hospitals; all patients had confirmed COVID-19 and underwent non-contrast chest CT. Data were divided into a training cohort (72 patients with 127 lesions from nine hospitals) and an independent test cohort (39 patients with 60 lesions from seven hospitals) according to the hospital in which the CT was performed. In all, 73 texture features were extracted from manually delineated lesion volumes, and 23 three-dimensional (3D) wavelets with eight decomposition modes were implemented to compare and validate the value of wavelet transformation for grade assessment. Finally, the optimal machine learning pipeline, valuable radiomic features, and final radiomic models were determined. The area under the receiver operating characteristic (ROC) curve (AUC), calibration curve, and decision curve were used to determine the diagnostic performance and clinical utility of the models.Results: Of the 187 lesions, 108 (57.75%) were diagnosed as mild lesions and 79 (42.25%) as moderate/ severe lesions. All selected radiomic features showed significant correlations with the grade of COVID-19 pulmonary lesions (P<0.05). Biorthogonal 1.1 (bior1.1) LLL was determined as the optimal wavelet transform mode. The wavelet transforming radiomic model had an AUC of 0.910 in the test cohort, outperforming the original radiomic model (AUC =0.880; P<0.05). Decision analysis showed the radiomic model could add a net benefit at any given threshold of probability.Conclusions: Wavelet transformation can enhance CT texture features. Wavelet transforming radiomics based on CT images can be used to effectively assess the grade of pulmonary lesions caused by COVID-19,which may facilitate individualized management of patients with this disease.
引用
收藏
页码:4758 / +
页数:16
相关论文
共 53 条
[21]   Stability of feature selection algorithm: A review [J].
Khaire, Utkarsh Mahadeo ;
Dhanalakshmi, R. .
JOURNAL OF KING SAUD UNIVERSITY-COMPUTER AND INFORMATION SCIENCES, 2022, 34 (04) :1060-1073
[22]   COVID-19 Pneumonia Diagnosis Using a Simple 2D Deep Learning Framework With a Single Chest CT Image: Model Development and Validation [J].
Ko, Hoon ;
Chung, Heewon ;
Kang, Wu Seong ;
Kim, Kyung Won ;
Shin, Youngbin ;
Kang, Seung Ji ;
Lee, Jae Hoon ;
Kim, Young Jun ;
Kim, Nan Yeol ;
Jung, Hyunseok ;
Lee, Jinseok .
JOURNAL OF MEDICAL INTERNET RESEARCH, 2020, 22 (06)
[23]   Shotgun metagenomics reveals both taxonomic and tryptophan pathway differences of gut microbiota in major depressive disorder patients [J].
Lai, Wen-tao ;
Deng, Wen-feng ;
Xu, Shu-xian ;
Zhao, Jie ;
Xu, Dan ;
Liu, Yang-hui ;
Guo, Yuan-yuan ;
Wang, Ming-bang ;
He, Fu-sheng ;
Ye, Shu-wei ;
Yang, Qi-fan ;
Liu, Tie-bang ;
Zhang, Ying-li ;
Wang, Sheng ;
Li, Min-zhi ;
Yang, Ying-jia ;
Xie, Xin-hui ;
Rong, Han .
PSYCHOLOGICAL MEDICINE, 2021, 51 (01) :90-101
[24]   The Applications of Artificial Intelligence in Chest Imaging of COVID-19 Patients: A Literature Review [J].
Laino, Maria Elena ;
Ammirabile, Angela ;
Posa, Alessandro ;
Cancian, Pierandrea ;
Shalaby, Sherif ;
Savevski, Victor ;
Neri, Emanuele .
DIAGNOSTICS, 2021, 11 (08)
[25]   Radiomics: the bridge between medical imaging and personalized medicine [J].
Lambin, Philippe ;
Leijenaar, Ralph T. H. ;
Deist, Timo M. ;
Peerlings, Jurgen ;
de Jong, Evelyn E. C. ;
van Timmeren, Janita ;
Sanduleanu, Sebastian ;
Larue, Ruben T. H. M. ;
Even, Aniek J. G. ;
Jochems, Arthur ;
van Wijk, Yvonka ;
Woodruff, Henry ;
van Soest, Johan ;
Lustberg, Tim ;
Roelofs, Erik ;
van Elmpt, Wouter ;
Dekker, Andre ;
Mottaghy, Felix M. ;
Wildberger, Joachim E. ;
Walsh, Sean .
NATURE REVIEWS CLINICAL ONCOLOGY, 2017, 14 (12) :749-762
[26]   CT Texture Analysis: Definitions, Applications, Biologic Correlates, and Challenges [J].
Lubner, Meghan G. ;
Smith, Andrew D. ;
Sandrasegaran, Kumar ;
Sahani, Dushyant V. ;
Pickhardt, Perry J. .
RADIOGRAPHICS, 2017, 37 (05) :1483-U304
[27]  
Lundberg SM, 2017, ADV NEUR IN, V30
[28]   Introduction to Radiomics [J].
Mayerhoefer, Marius E. ;
Materka, Andrzej ;
Langs, Georg ;
Haggstrom, Ida ;
Szczypinski, Piotr ;
Gibbs, Peter ;
Cook, Gary .
JOURNAL OF NUCLEAR MEDICINE, 2020, 61 (04) :488-495
[29]   Lung Cancer Radiomics Highlights from the IEEE Video and Image Processing Cup 2018 Student Competition [J].
Mohammadi, Arash ;
Afshar, Parnian ;
Asif, Amir ;
Farahani, Keyvan ;
Kirby, Justin ;
Oikonomou, Anastasia ;
Plataniotis, Konstantinos N. .
IEEE SIGNAL PROCESSING MAGAZINE, 2019, 36 (01) :164-173
[30]  
Molnar C., 2019, Interpretable machine learning: a guide for making black box models explainable