Fuzzy generalized fast marching method for 3D segmentation of brain structures

The aim of this work is to develop a new model for segmentation of brain structures in medical brain MR images. Brain segmentation is a challenging task due to the complex anatomical structure of brain structures as well as intensity nonuniformity, partial volume effects and noise. Generally the structures of interest are of relatively complicated size and have significant shape variations, the structures boundaries may be blurry or even missing, and the surrounding background is full of irrelevant edges. Segmentation methods based on fuzzy models have been developed to overcome the uncertainty caused by these effects. In this study, we propose a robust and accurate brain structures segmentation method based on a combination of fuzzy model and deformable model. Our method breaks up into two great parts. Initially, a preliminary stage allows to construct the various information maps, in particular a fuzzy map, used as a principal information source, constructed using the Fuzzy C-means method (FCM). Then, a deformable model implemented with the generalized fast marching method (GFMM), evolves toward the structure to be segmented, under the action of a normal force defined from these information maps. In this sense, we used a powerful evolution function based on a fuzzy model, adapted for brain structures. Two extensions of our general method are presented in this work. The first extension concerns the addition of an edge map to the fuzzy model and the use of some rules adapted to the segmentation process. The second extension consists of the use of several models evolving simultaneously to segment several structures. Extensive experiments are conducted on both simulated and real brain MRI datasets. Our proposed approach shows promising and achieves significant improvements with respect to several state-of-the-art methods and with the three practical segmentation techniques widely used in neuroimaging studies, namely SPM, FSL, and Freesurfer.