Reclassifying stroke lesion anatomy

被引:18
作者
Bonkhoff, Anna K. [1 ,2 ]
Xu, Tianbo [2 ]
Nelson, Amy [2 ]
Gray, Robert [2 ]
Jha, Ashwani [2 ]
Cardoso, Jorge [3 ]
Ourselin, Sebastien [3 ]
Rees, Geraint [4 ]
Jager, Hans Rolf [2 ]
Nachev, Parashkev [2 ]
机构
[1] Harvard Med Sch, J Philip Kistler Stroke Res Ctr, Massachusetts Gen Hosp, Dept Neurol, Boston, MA 02115 USA
[2] UCL, UCL Queen Sq Inst Neurol, London, England
[3] Kings Coll London, Sch Biomed Engn & Imaging Sci, London, England
[4] UCL, Fac Life Sci, London, England
基金
英国惠康基金;
关键词
Stroke; Lesion anatomy; Lesion-deficit prediction; Dimensionality reduction; Brain imaging; HUMAN BRAIN-LESIONS; NONNEGATIVE MATRIX; CLASSIFICATION; ACCURACY; ALGORITHMS; PREDICTION; INFERENCE;
D O I
10.1016/j.cortex.2021.09.007
中图分类号
B84 [心理学]; C [社会科学总论]; Q98 [人类学];
学科分类号
03 ; 0303 ; 030303 ; 04 ; 0402 ;
摘要
Cognitive and behavioural outcomes in stroke reflect the interaction between two complex anatomically-distributed patterns: the functional organization of the brain and the structural distribution of ischaemic injury. Conventional outcome models-for individual prediction or population-level inference-commonly ignore this complexity, discarding anatomical variation beyond simple characteristics such as lesion volume. This sets a hard limit on the maximum fidelity such models can achieve. High-dimensional methods can overcome this problem, but only at prohibitively large data scales. Drawing on one of the largest published collections of anatomically-registered imaging of acute stroke-N = 1333-here we use non-linear dimensionality reduction to derive a succinct latent representation of the anatomical patterns of ischaemic injury, agglomerated into 21 distinct intuitive categories. We compare the maximal predictive performance it enables against both simpler low-dimensional and more complex high-dimensional representations, employing multiple empirically-informed ground truth models of distributed structure-outcome relationships. We show our representation sets a substantially higher ceiling on predictive fidelity than conventional low-dimensional approaches, but lower than that achievable within a high-dimensional framework. Where descriptive simplicity is a necessity, such as within clinical care or research trials of modest size, the representation we propose arguably offers a favourable compromise of compactness and fidelity. (C) 2021 The Author(s). Published by Elsevier Ltd.
引用
收藏
页码:1 / 12
页数:12
相关论文
共 56 条
  • [1] Data-driven identification of prognostic tumor subpopulations using spatially mapped t-SNE of mass spectrometry imaging data
    Abdelmoula, Walid M.
    Balluff, Benjamin
    Englert, Sonja
    Dijkstra, Jouke
    Reinders, Marcel J. T.
    Walch, Axel
    McDonnell, Liam A.
    Lelieveldt, Boudewijn P. F.
    [J]. PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA, 2016, 113 (43) : 12244 - 12249
  • [2] CLASSIFICATION OF SUBTYPE OF ACUTE ISCHEMIC STROKE - DEFINITIONS FOR USE IN A MULTICENTER CLINICAL-TRIAL
    ADAMS, HP
    BENDIXEN, BH
    KAPPELLE, LJ
    BILLER, J
    LOVE, BB
    GORDON, DL
    MARSH, EE
    KASE, CS
    WOLF, PA
    BABIKIAN, VL
    LICATAGEHR, EE
    ALLEN, N
    BRASS, LM
    FAYAD, PB
    PAVALKIS, FJ
    WEINBERGER, JM
    TUHRIM, S
    RUDOLPH, SH
    HOROWITZ, DR
    BITTON, A
    MOHR, JP
    SACCO, RL
    CLAVIJO, M
    ROSENBAUM, DM
    SPARR, SA
    KATZ, P
    KLONOWSKI, E
    CULEBRAS, A
    CAREY, G
    MARTIR, NI
    FICARRA, C
    HOGAN, EL
    CARTER, T
    GURECKI, P
    MUNTZ, BK
    RAMIREZLASSEPAS, M
    TULLOCH, JW
    QUINONES, MR
    MENDEZ, M
    ZHANG, SM
    ALA, T
    JOHNSTON, KC
    ANDERSON, DC
    TARREL, RM
    NANCE, MA
    BUDLIE, SR
    DIERICH, M
    HELGASON, CM
    HIER, DB
    SHAPIRO, RA
    [J]. STROKE, 1993, 24 (01) : 35 - 41
  • [3] Human Lesion Studies in the 21st Century
    Adolphs, Ralph
    [J]. NEURON, 2016, 90 (06) : 1151 - 1153
  • [4] New Approach to Stroke Subtyping: The A-S-C-O (Phenotypic) Classification of Stroke
    Amarenco, P.
    Bogousslavsky, J.
    Caplan, L. R.
    Donnan, G. A.
    Hennerici, M. G.
    [J]. CEREBROVASCULAR DISEASES, 2009, 27 (05) : 502 - 508
  • [5] viSNE enables visualization of high dimensional single-cell data and reveals phenotypic heterogeneity of leukemia
    Amir, El-ad David
    Davis, Kara L.
    Tadmor, Michelle D.
    Simonds, Erin F.
    Levine, Jacob H.
    Bendall, Sean C.
    Shenfeld, Daniel K.
    Krishnaswamy, Smita
    Nolan, Garry P.
    Pe'er, Dana
    [J]. NATURE BIOTECHNOLOGY, 2013, 31 (06) : 545 - +
  • [6] The immune cell landscape in kidneys of patients with lupus nephritis
    Arazi, Arnon
    Rao, Deepak A.
    Berthier, Celine C.
    Davidson, Anne
    Liu, Yanyan
    Hoover, Paul J.
    Chicoine, Adam
    Eisenhaure, Thomas M.
    Jonsson, A. Helena
    Li, Shuqiang
    Lieb, David J.
    Zhang, Fan
    Slowikowski, Kamil
    Browne, Edward P.
    Noma, Akiko
    Sutherby, Danielle
    Steelman, Scott
    Smilek, Dawn E.
    Tosta, Patti
    Apruzzese, William
    Massarotti, Elena
    Dall'Era, Maria
    Park, Meyeon
    Kamen, Diane L.
    Furie, Richard A.
    Payan-Schober, Fernanda
    Pendergraft, William F., III
    McInnis, Elizabeth A.
    Buyon, Jill P.
    Petri, Michelle A.
    Putterman, Chaim
    Kalunian, Kenneth C.
    Woodle, E. Steve
    Lederer, James A.
    Hildeman, David A.
    Nusbaum, Chad
    Raychaudhuri, Soumya
    Kretzler, Matthias
    Anolik, Jennifer H.
    Brenner, Michael B.
    Wofsy, David
    Hacohen, Nir
    Diamond, Betty
    Waguespack, Dia
    Connery, Sean M.
    McMahon, Maureen A.
    McCune, William J.
    Kado, Ruba B.
    Hsu, Raymond
    Cunningham, Melissa A.
    [J]. NATURE IMMUNOLOGY, 2019, 20 (07) : 902 - +
  • [7] A Template and Probabilistic Atlas of the Human Sensorimotor Tracts using Diffusion MRI
    Archer, Derek B.
    Vaillancourt, David E.
    Coombes, Stephen A.
    [J]. CEREBRAL CORTEX, 2018, 28 (05) : 1685 - 1699
  • [8] Unified segmentation
    Ashburner, J
    Friston, KJ
    [J]. NEUROIMAGE, 2005, 26 (03) : 839 - 851
  • [9] Representation Learning: A Review and New Perspectives
    Bengio, Yoshua
    Courville, Aaron
    Vincent, Pascal
    [J]. IEEE TRANSACTIONS ON PATTERN ANALYSIS AND MACHINE INTELLIGENCE, 2013, 35 (08) : 1798 - 1828
  • [10] Toward discovery science of human brain function
    Biswal, Bharat B.
    Mennes, Maarten
    Zuo, Xi-Nian
    Gohel, Suril
    Kelly, Clare
    Smith, Steve M.
    Beckmann, Christian F.
    Adelstein, Jonathan S.
    Buckner, Randy L.
    Colcombe, Stan
    Dogonowski, Anne-Marie
    Ernst, Monique
    Fair, Damien
    Hampson, Michelle
    Hoptman, Matthew J.
    Hyde, James S.
    Kiviniemi, Vesa J.
    Kotter, Rolf
    Li, Shi-Jiang
    Lin, Ching-Po
    Lowe, Mark J.
    Mackay, Clare
    Madden, David J.
    Madsen, Kristoffer H.
    Margulies, Daniel S.
    Mayberg, Helen S.
    McMahon, Katie
    Monk, Christopher S.
    Mostofsky, Stewart H.
    Nagel, Bonnie J.
    Pekar, James J.
    Peltier, Scott J.
    Petersen, Steven E.
    Riedl, Valentin
    Rombouts, Serge A. R. B.
    Rypma, Bart
    Schlaggar, Bradley L.
    Schmidt, Sein
    Seidler, Rachael D.
    Siegle, Greg J.
    Sorg, Christian
    Teng, Gao-Jun
    Veijola, Juha
    Villringer, Arno
    Walter, Martin
    Wang, Lihong
    Weng, Xu-Chu
    Whitfield-Gabrieli, Susan
    Williamson, Peter
    Windischberger, Christian
    [J]. PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA, 2010, 107 (10) : 4734 - 4739