DFT, Molecular Docking and Drug-likeness Analysis: Acrylate molecule bearing perfluorinated pendant unit

被引:10
作者
Soykan, U. [1 ]
Sert, Y. [2 ]
Yildirim, G. [3 ]
机构
[1] Abant Izzet Baysal Univ, Yenicaga Yasar Cel Vocat High Sch, TR-14300 Bolu, Turkey
[2] Yozgat Bozok Univ, Sorgun Vocat High Sch, TR-66900 Yozgat, Turkey
[3] Abant Izzet Baysal Univ, Dept Mech Engn, TR-14300 Bolu, Turkey
关键词
DFT; HOMO-LUMO; MEP; molecular docking; drug-likeness; NMR CHEMICAL-SHIFTS; FT-IR; C-13; NMR; VIBRATIONAL-SPECTRA; SURFACE-PROPERTIES; SIDE-GROUPS; RAMAN; MEP; SPECTROSCOPY; POLYMERS;
D O I
10.1016/j.molstruc.2021.130940
中图分类号
O64 [物理化学(理论化学)、化学物理学];
学科分类号
070304 ; 081704 ;
摘要
In this study, 2-oxo-1,1-diphenyl-2-((3,3,4,4,5,5,6,6,7,7,8,8,8-tridecafluorooctyl) oxy)ethyl acrylate (ODDFA) molecule was synthesized by the condensation reaction method and the detailed characterization of ODDFA was experimentally and theoretically performed for the first time. As for the theoretical work, molecular geometry, vibrational frequencies, chemical shifts (H-1 and C-13), electrochemical properties and the molecular electrostatic potential (MEP) were investigated with density functional theory method (DFT, B3LYP) at the standard 6-311++G(d,p) level of calculation in the ground state. Moreover, molecular docking simulation and drug-likeness studies of title compound are carried out to determine the pharmacy potential for the title molecule. Bond lengths and angles, the electron engagements, conjugative effect, lone pairs of electrons and possible intra-molecular charge transfer regions regarding the most favored molecular structure of the ODDFA are discussed in detail. The obtained results show that mostly all the computations and experimental results are noted to be in a good correlation with each other. HOMOLUMO analysis also depicts that the pi-pi* conjugations are concentrated on the phenyl rings and carbonyl groups as well as ODDFA molecule possesses the kinetic chemical stability. As for the MEP examination, there exist both the nucleophilic and electrophilic reactive regions together over the surface of molecule thanks to the existence of both the polar and apolar functional groups in the molecule. Moreover, the molecular docking studies confirm that the ODDFA compound studied have the strong potential to behave as the potent inhibitor for tyrosinase with the PDE code of 5I38. Drug-likeness analysis also reveals that the molecule possesses considerable molinspiration bioactivity. (C) 2021 Elsevier B.V. All rights reserved.
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页数:15
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共 83 条
[51]  
Muthu S., 2020, HELIYON, V6
[52]   Solubility and diffusivity of sodium chloride in phase-separated block copolymers of poly(2-dimethylaminoethyl methacrylate), poly (1,1'-dihydroperfluorooctyl methacrylate) and poly(1,1,2,2-tetrahydroperfluorooctyl acrylate) [J].
Nagai, K ;
Tanaka, S ;
Hirata, Y ;
Nakagawa, T ;
Arnold, ME ;
Freeman, BD ;
Leroux, D ;
Betts, DE ;
DeSimone, JM ;
DiGiano, FA .
POLYMER, 2001, 42 (25) :9941-9948
[53]   Experimental and Computational Investigations on the Molecular Structure, Vibrational Spectra, Electronic Properties, FMO and MEP Analyses of 4,6-Bis(4-Fluorophenyl)-5,6-dihydropyrimidin-2(1H)-one: A DFT Insight [J].
Pathade, S. S. ;
Jagdale, B. S. .
PHYSICAL CHEMISTRY RESEARCH, 2020, 8 (04) :671-687
[54]   The role of nanoscale topography on super-hydrophobicity: a study of fluoro-based polymer film on vertical carbon nanotubes [J].
Phani, A. R. ;
Grossi, V. ;
Passacantando, M. ;
Santucci, S. .
JOURNAL OF EXPERIMENTAL NANOSCIENCE, 2007, 2 (1-2) :63-71
[55]   Catalytic Enantioselective Cyclopropanation of α-Fluoroacrylates: An Experimental and Theoretical Study [J].
Pons, Amandine ;
Tognetti, Vincent ;
Joubert, Laurent ;
Poisson, Thomas ;
Pannecoucke, Xavier ;
Charette, Andre B. ;
Jubault, Philippe .
ACS CATALYSIS, 2019, 9 (03) :2594-2598
[56]   Spectroscopic and DFT studies, structural determination, chemical properties and molecular docking of 1-(3-bromo-2-thienyl)-3-[4-(dimethylamino)-phenyl]prop-2-en-1-one [J].
Ramesh, P. ;
Caroline, M. Lydia ;
Muthu, S. ;
Narayana, B. ;
Raja, M. ;
Aayisha, S. .
JOURNAL OF MOLECULAR STRUCTURE, 2020, 1200
[57]   Syntheses of N-substituted benzimidazolone derivatives: DFT calculations, Hirshfeld surface analysis, molecular docking studies and antibacterial activities [J].
Saber, Asmaa ;
Sebbar, Nada Kheira ;
Sert, Yusuf ;
Alzaqri, Nabil ;
Hokelek, Tuncer ;
El Ghayati, Lhoussaine ;
Talbaoui, Ahmed ;
Mague, Joel T. ;
Baba, Yassir Filali ;
Urrutigoity, Martine ;
Essassi, El Mokhtar .
JOURNAL OF MOLECULAR STRUCTURE, 2020, 1200
[58]   FT-IR, micro-Raman and UV-vis spectroscopic and quantum chemical calculation studies on the 6-chloro-4-hydroxy-3-phenyl pyridazine compound [J].
Sarikaya, Ebru Karakas ;
Bahceli, Semiha ;
Varkal, Dondu ;
Dereli, Omer .
JOURNAL OF MOLECULAR STRUCTURE, 2017, 1141 :44-52
[59]  
Scrocco E., 1973, New Concepts II, P95, DOI DOI 10.1007/3-540-06399-4_6
[60]   First Structures of an Active Bacterial Tyrosinase Reveal Copper Plasticity [J].
Sendovski, Mor ;
Kanteev, Margarita ;
Ben-Yosef, Vered Shuster ;
Adir, Noam ;
Fishman, Ayelet .
JOURNAL OF MOLECULAR BIOLOGY, 2011, 405 (01) :227-237