Proposal for a unified classification system and nomenclature of lagoviruses

被引：169

作者：

Le Pendu, Jacques ^{[1
]}

Abrantes, Joana ^{[2
]}

Bertagnoli, Stephane ^{[3
]}

Guitton, Jean-Sebastien ^{[4
]}

Le Gall-Recule, Ghislaine ^{[5
]}

Lopes, Ana Margarida ^{[2
]}

Marchandeau, Stephane ^{[4
]}

Alda, Fernando ^{[6
]}

Almeida, Tereza ^{[2
,4
]}

Celio, Alves Paulo ^{[2
,7
,8
]}

Barcena, Juan ^{[9
]}

Burmakina, Galina ^{[10
]}

Blanco, Esther ^{[9
]}

Calvete, Carlos ^{[11
]}

Cavadini, Patrizia ^{[12
]}

Cooke, Brian ^{[13
,14
]}

Dalton, Kevin ^{[15
]}

Delibes Mateos, Miguel ^{[16
]}

Deptula, Wieslaw ^{[17
]}

Eden, John Sebastian ^{[18
,19
]}

Wang, Fang ^{[20
]}

Ferreira, Catarina C. ^{[21
,22
]}

Ferreira, Paula ^{[23
,24
]}

Foronda, Pilar ^{[25
]}

Goncalves, David ^{[7
]}

Gavier-Widen, Dolores ^{[26
,27
]}

Hall, Robin ^{[28
]}

Hukowska-Szematowicz, Beata ^{[29
]}

Kerr, Peter ^{[30
]}

Kovaliski, John ^{[31
]}

Lavazza, Antonio ^{[12
]}

Mahar, Jackie ^{[30
]}

Malogolovkin, Alexander

Marques, Raquel M. ^{[23
,24
]}

Marques, Sara ^{[2
,32
]}

Martin-Alonso, Aaron ^{[25
]}

Monterroso, Pedro ^{[2
]}

Moreno, Sacramento ^{[33
]}

Mutze, Greg

Neimanis, Aleksija ^{[26
,27
]}

Niedzwiedzka-Rystwej, Paulina ^{[29
]}

Peacock, David ^{[31
]}

Parra, Francisco ^{[15
]}

Rocchi, Mara ^{[34
]}

Rouco, Carlos ^{[35
]}

Ruvoen-Clouet, Nathalie ^{[1
]}

Silva, Eliane ^{[32
]}

Silverio, Diogo ^{[2
]}

Strive, Tanja ^{[28
]}

Thompson, Gertrudes ^{[2
,32
]}

机构：

[1] Univ Nantes, Univ Angers, INSERM, CRCINA, Nantes, France

[2] Univ Porto, Ctr Invest Biodiversidade & Recursos Genet, CIBIO InBio, Vairao, Portugal

[3] Univ Toulouse, INP ENVT, Toulouse, France

[4] Univ Toulouse, INP ENVT, Dept Studies & Res, Natl Hunting & Wildlife Agcy ONCFS, Nantes, France

[5] French Agcy Food Environm & Occupat Hlth & Safety, Ploufragan Plouzane Lab, Avian & Rabbit Virol Immunol Parasitol Unit, Ploufragan, France

[6] Louisiana State Univ, Museum Nat Sci, 119 Foster Hall, Baton Rouge, LA 70803 USA

[7] Univ Porto, Dept Biol, Fac Ciencias, Oporto, Portugal

[8] Univ Montana, Wildlife Biol Program, 32 Campus Dr, Missoula, MT 59812 USA

[9] Ctr Invest Sanidad Anim INIA CISA, Madrid 28130, Spain

[10] Natl Res Inst Vet Virol & Microbiol VNIIVViM, Pokrov, Russia

[11] CITA Zaragoza Univ, Agrifood Res & Technol Ctr Aragon CITA, Anim Prod & Hlth Dept, Agrifood Inst Aragon IA2, Zaragoza 50059, Spain

[12] Ist Zooprofilatt Sperimentale Lombardia & Emilia, Prote & Virol Unit, Via Antonio Bianchi 7-9, I-25124 Brescia, Italy

[13] Univ Canberra, Invas Anims Cooperat Res Ctr, Canberra, ACT, Australia

[14] Univ Canberra, Inst Appl Ecol, Canberra, ACT, Australia

[15] Univ Oviedo, Inst Univ Biotecnol Asturias, Dept Bioquim & Biol Mol, Edificio Santiago Gascon, Asturias, Spain

[16] Univ Seville, Fac Biol, Dept Biol Vegetal & Ecol, Apartado 1095, E-41080 Seville, Spain

[17] Univ Szczecin, Dept Microbiol, Fac Biol, Felczaka 3c,50, PL-71412 Szczecin, Poland

[18] Univ Sydney, Marie Bashir Inst Infect Dis & Biosecur, Charles Perkins Ctr, Sch Life & Environm Sci, Sydney, NSW, Australia

[19] Univ Sydney, Sydney Med Sch, Sydney, NSW, Australia

[20] Jiangsu Acad Agr Sci, Natl Ctr Engn Res Vet Bioprod, Minist Agr, Key Lab Vet Biol Engn & Technol,lnst Vet Med, Nanjing, Jiangsu, Peoples R China

[21] Trent Univ, Dept Biol, Peterborough, ON, Canada

[22] UFZ Helmholtz Ctr Environm Res, Dept Conservat Biol, Leipzig, Germany

[23] Univ Porto, ICBAS Abel Salazar Inst Biomed Sci, Dept Anat, Oporto, Portugal

[24] Univ Porto, UMIB Unit Multidisciplinary Biomed Res, Oporto, Portugal

[25] Univ La Laguna, Univ Inst Trop Dis & Publ Hlth Canary Isl, Dept Obstet & Gynecol, Pediat,Prevent Med & Publ Hlth,Toxicol,Forens Med, Canary Islands, Spain

[26] Natl Vet Inst SVA, Dept Pathol & Wildlife Dis, Uppsala, Sweden

[27] Swedish Univ Agr Sci, Dept Biomed Sci & Vet Publ Hlth, Uppsala, Sweden

[28] CSIRO, Hlth & Biosecur, Canberra, ACT, Australia

[29] Univ Szczecin, Fac Biol, Dept Immunol, Z Felczaka 3c, PL-71412 Szczecin, Poland

[30] Univ Canberra, Invas Anim Cooperat Res Ctr, Canberra, ACT, Australia

[31] Primary Ind & Reg SA, Adelaide, SA, Australia

[32] Univ Porto, Inst Ciencias Biomed Abe Salazar, Dept Clin Vet ICBAS, Oporto, Portugal

[33] CSIC, Ethol & Biodivers Conservat Dept, Biol Stn, Seville 41092, Spain

[34] Moredun Res Inst, Pentlands Sci Pk, Penicuik EH26 0PZ, Midlothian, Scotland

[35] Univ Cordoba, Dept Zool, Campus Rabanales, E-14071 Cordoba, Spain

[36] lnst Invest & Formacao Avancada Ciencias & Tecnol, Gandra, Portugal

来源：

JOURNAL OF GENERAL VIROLOGY | 2017年 / 98卷 / 07期

关键词：

classification; nomenclature; RNA virus; calicivirus; lagovirus; phylogeny; RABBIT-HEMORRHAGIC-DISEASE; BROWN HARE SYNDROME; EUROPEAN BROWN; SYNDROME VIRUS; EXPERIMENTAL TRANSMISSION; MOLECULAR EPIDEMIOLOGY; MOUNTAIN HARES; VARIANT RHDV; RECOMBINATION; CALICIVIRUS;

D O I：

10.1099/jgv.0.000840

中图分类号：

Q81 [生物工程学（生物技术）]; Q93 [微生物学];

学科分类号：

071005 ; 0836 ; 090102 ; 100705 ;

摘要：

Lagoviruses belong to the Caliciviridae family. They were first recognized as highly pathogenic viruses of the European rabbit (Oryctolagus cuniculus) and European brown hare (Lepus europaeus) that emerged in the 1970-1980s, namely, rabbit haemorrhagic disease virus (RHDV) and European brown hare syndrome virus (EBHSV), according to the host species from which they had been first detected. However, the diversity of lagoviruses has recently expanded to include new related viruses with varying pathogenicity, geographic distribution and host ranges. Together with the frequent recombination observed amongst circulating viruses, there is a clear need to establish precise guidelines for classifying and naming lagovirus strains. Therefore, here we propose a new nomenclature based on phylogenetic relationships. In this new nomenclature, a single species of lagovirus would be recognized and called Lagovirus europaeus. The species would be divided into two genogroups that correspond to RHDV- and EBHSV-related viruses, respectively. Genogroups could be subdivided into genotypes, which could themselves be subdivided into phylogenetically well-supported variants. Based on available sequences, pairwise distance cutoffs have been defined, but with the accumulation of new sequences these cutoffs may need to be revised. We propose that an international working group could coordinate the nomenclature of lagoviruses and any proposals for revision.

引用

页码：1658 / 1666

页数：9

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