Enzyme kinetics and the maximum entropy production principle

被引:27
|
作者
Dobovisek, Andrej [1 ]
Zupanovic, Pasko [2 ]
Brumen, Milan [1 ,3 ]
Bonacic-Losic, Zeljana [2 ]
Kuic, Domagoj [2 ]
Juretic, Davor [2 ]
机构
[1] Univ Maribor, Fac Nat Sci & Math, Fac Med, SI-2000 Maribor, Slovenia
[2] Univ Split, Fac Sci, Split 21000, Croatia
[3] Jozef Stefan Inst, SI-1000 Ljubljana, Slovenia
关键词
Evolution; Enzyme; beta Lactamase; Michaelis-Menten kinetics; MEP principle; IRREVERSIBLE-PROCESSES; EVOLUTIONARY OPTIMIZATION; CATALYTIC EFFICIENCY; RECIPROCAL RELATIONS; INFORMATION-THEORY; SYSTEMS; MODELS; PHOSPHORYLATION; HYPOTHESIS; THEOREM;
D O I
10.1016/j.bpc.2010.12.009
中图分类号
Q5 [生物化学]; Q7 [分子生物学];
学科分类号
071010 ; 081704 ;
摘要
A general proof is derived that entropy production can be maximized with respect to rate constants in any enzymatic transition. This result is used to test the assumption that biological evolution of enzyme is accompanied with an increase of entropy production in its internal transitions and that such increase can serve to quantify the progress of enzyme evolution. The state of maximum entropy production would correspond to fully evolved enzyme. As an example the internal transition ES <-> EP in a generalized reversible Michaelis-Menten three state scheme is analyzed. A good agreement is found among experimentally determined values of the forward rate constant in internal transitions ES -> EP for three types of beta-Lactamase enzymes and their optimal values predicted by the maximum entropy production principle, which agrees with earlier observations that beta-Lactamase enzymes are nearly fully evolved. The optimization of rate constants as the consequence of basic physical principle, which is the subject of this paper, is a completely different concept from a) net metabolic flux maximization or b) entropy production minimization (in the static head state), both also proposed to be tightly connected to biological evolution. (C) 2011 Elsevier B.V. All rights reserved.
引用
收藏
页码:49 / 55
页数:7
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