DNA-Based Nanopore Sensing

被引:91
作者
Liu, Lei [1 ]
Wu, Hai-Chen [1 ,2 ]
机构
[1] Chinese Acad Sci, Inst High Energy Phys, Key Lab Biomed Effects Nanomat & Nanosafety, Beijing 100049, Peoples R China
[2] Chinese Acad Sci, Beijing Natl Lab Mol Sci, Inst Chem, Key Lab Analyt Chem Living Biosyst, Beijing 100190, Peoples R China
基金
中国国家自然科学基金;
关键词
current signatures; DNA probes; nanopores; quantification; sensing; ACCURATE DATA PROCESS; SINGLE-NUCLEOTIDE RESOLUTION; WALLED CARBON NANOTUBES; HOST-GUEST INTERACTIONS; DOUBLE-STRANDED DNA; LABEL-FREE; PROTEIN-DETECTION; MOLECULE ANALYSIS; REAL-TIME; CARRIERS;
D O I
10.1002/anie.201604405
中图分类号
O6 [化学];
学科分类号
0703 ;
摘要
Nanopore sensing is an attractive, label-free approach that can measure single molecules. Although initially proposed for rapid and low-cost DNA sequencing, nanopore sensors have been successfully employed in the detection of a wide variety of substrates. Early successes were mostly achieved based on two main strategies by 1)creating sensing elements inside the nanopore through protein mutation and chemical modification or 2)using molecular adapters to enhance analyte recognition. Over the past fiveyears, DNA molecules started to be used as probes for sensing rather than substrates for sequencing. In this Minireview, we highlight the recent research efforts of nanopore sensing based on DNA-mediated characteristic current events. As nanopore sensing is becoming increasingly important in biochemical and biophysical studies, DNA-based sensing may find wider applications in investigating DNA-involving biological processes.
引用
收藏
页码:15216 / 15222
页数:7
相关论文
共 84 条
[11]   Membrane-Spanning DNA Nanopores with Cytotoxic Effect [J].
Burns, Jonathan R. ;
Al-Juffali, Noura ;
Janes, Sam M. ;
Howorka, Stefan .
ANGEWANDTE CHEMIE-INTERNATIONAL EDITION, 2014, 53 (46) :12466-12470
[12]   Single-molecule DNA detection with an engineered MspA protein nanopore [J].
Butler, Tom Z. ;
Pavlenok, Mikhail ;
Derrington, Ian M. ;
Niederweis, Michael ;
Gundlach, Jens H. .
PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA, 2008, 105 (52) :20647-20652
[13]  
Cao C, 2016, NAT NANOTECHNOL, V11, P713, DOI [10.1038/nnano.2016.66, 10.1038/NNANO.2016.66]
[14]   Stochastic sensing of nanomolar inositol 1,4,5-trisphosphate with an engineered pore [J].
Cheley, S ;
Gu, LQ ;
Bayley, H .
CHEMISTRY & BIOLOGY, 2002, 9 (07) :829-838
[15]   Automated forward and reverse ratcheting of DNA in a nanopore at 5-Å precision [J].
Cherf, Gerald M. ;
Lieberman, Kate R. ;
Rashid, Hytham ;
Lam, Christopher E. ;
Karplus, Kevin ;
Akeson, Mark .
NATURE BIOTECHNOLOGY, 2012, 30 (04) :344-348
[16]  
Clarke J, 2009, NAT NANOTECHNOL, V4, P265, DOI [10.1038/NNANO.2009.12, 10.1038/nnano.2009.12]
[17]   Solid-state nanopores [J].
Dekker, Cees .
NATURE NANOTECHNOLOGY, 2007, 2 (04) :209-215
[18]   Comment on Accurate Data Process for Nanopore Analysis [J].
Dunbar, William B. .
ANALYTICAL CHEMISTRY, 2015, 87 (20) :10650-10652
[19]   DNA-cation interactions: Quo vadis? [J].
Egli, M .
CHEMISTRY & BIOLOGY, 2002, 9 (03) :277-286
[20]  
Engelhart Aaron E., 2009, P118