Revealing the structural origin of the redox-Bohr effect: the first solution structure of a cytochrome from Geobacter sulfurreducens

被引:47
作者
Morgado, Leonor [2 ]
Paixao, Vitor B. [3 ]
Schiffer, Marianne [4 ]
Pokkuluri, P. Raj [4 ]
Bruix, Marta [1 ]
Salgueiro, Carlos A. [2 ]
机构
[1] CSIC, Inst Phys Chem Rocasolano, Dept Chem & Phys Biol, Madrid 28006, Spain
[2] Univ Nova Lisboa, Fac Sci & Technol, Dept Chem, Requimte CQFB, P-2829516 Caparica, Portugal
[3] Univ Nova Lisboa, Inst Technol Chem & Biol, P-2780156 Oeiras, Portugal
[4] Argonne Natl Lab, Biosci Div, Argonne, IL 60439 USA
关键词
Geobacter sulfurreducens; multihaem cytochrome; NMR; redox protein; structure-function relationship; C-TYPE CYTOCHROME; ESCHERICHIA-COLI; DESULFUROMONAS-ACETOXIDANS; TETRAHEME CYTOCHROME; PROTEIN STRUCTURES; BACKBONE DYNAMICS; NMR; C(7); FAMILY; RELAXATION;
D O I
10.1042/BJ20111103
中图分类号
Q5 [生物化学]; Q7 [分子生物学];
学科分类号
071010 ; 081704 ;
摘要
Gs (Geobacter sulfurreducens) can transfer electrons to the exterior of its cells, a property that makes it a preferential candidate for the development of biotechnological applications. Its genome encodes over 100 cytochromes and, despite their abundance and key functional roles, to date there is no structural information for these proteins in solution. The trihaem cytochrome PpcA might have a crucial role in the conversion of electronic energy into protonmotive force, a fundamental step for ATP synthesis in the presence of extracellular electron acceptors. In the present study, (15)N-labelled PpcA was produced and NMR spectroscopy was used to determine its solution structure in the fully reduced state, its backbone dynamics and the pH-dependent conformational changes. The structure obtained is well defined, with an average pairwise rmsd (root mean square deviation) of 0.25 angstrom (1 angstrom = 0.1 nm) for the backbone atoms and 0.99 angstrom for all heavy atoms, and constitutes the first solution structure of a Gs cytochrome. The redox-Bohr centre responsible for controlling the electron/proton transfer was identified, as well as the putative interacting regions between PpcA and its redox partners. The solution structure of PpcA will constitute the foundation for studies aimed at mapping out in detail these interacting regions.
引用
收藏
页码:179 / 187
页数:9
相关论文
共 34 条
  • [1] Overproduction of the Bradyrhizobium japonicum c-type cytochrome subunits of the cbb3 oxidase in Escherichia coli
    Arslan, E
    Schulz, H
    Zufferey, R
    Künzler, P
    Thöny-Meyer, L
    [J]. BIOCHEMICAL AND BIOPHYSICAL RESEARCH COMMUNICATIONS, 1998, 251 (03) : 744 - 747
  • [2] 800 MHz 1H NMR solution structure refinement of oxidized cytochrome c7 from Desulfuromonas acetoxidans
    Assfalg, M
    Banci, L
    Bertini, I
    Bruschi, M
    Turano, P
    [J]. EUROPEAN JOURNAL OF BIOCHEMISTRY, 1998, 256 (02): : 261 - 270
  • [3] A proton-NMR investigation of the fully reduced cytochrome c7 from Desulfuromonas acetoxidans -: Comparison between the reduced and the oxidized forms
    Assfalg, M
    Banci, L
    Bertini, I
    Bruschi, M
    Giudici-Orticoni, MT
    Turano, P
    [J]. EUROPEAN JOURNAL OF BIOCHEMISTRY, 1999, 266 (02): : 634 - 643
  • [4] Structure of cytochrome c7 from Desulfuromonas acetoxidans at 1.9 Å resolution
    Czjzek, M
    Arnoux, P
    Haser, R
    Shepard, W
    [J]. ACTA CRYSTALLOGRAPHICA SECTION D-STRUCTURAL BIOLOGY, 2001, 57 : 670 - 678
  • [5] DANTAS JM, 2011, J BIOL INORG CHEM, DOI DOI 10.1007/S00775-00011-00821-00778
  • [6] The proteome of dissimilatory metal-reducing microorganism Geobacter sulfurreducens under various growth conditions
    Ding, Yan-Huai R.
    Hixson, Kim K.
    Giometti, Carol S.
    Stanley, Ann
    Esteve-Nunez, Abraham
    Khare, Tripti
    Tollaksen, Sandra L.
    Zhu, Wenhong
    Adkins, Joshua N.
    Lipton, Mary S.
    Smith, Richard D.
    Mester, Tunde
    Lovley, Derek R.
    [J]. BIOCHIMICA ET BIOPHYSICA ACTA-PROTEINS AND PROTEOMICS, 2006, 1764 (07): : 1198 - 1206
  • [7] Isotopic labeling of c-type multiheme cytochromes overexpressed in E-coli
    Fernandes, Ana P.
    Couto, Isabel
    Morgado, Leonor
    Londer, Yuri Y.
    Salgueiro, Carlos A.
    [J]. PROTEIN EXPRESSION AND PURIFICATION, 2008, 59 (01) : 182 - 188
  • [8] The tetraheme cytochrome from Shewanella oneidensis MR-1 shows thermodynamic bias for functional specificity of the hemes
    Fonseca, Bruno M.
    Saraiva, Ivo H.
    Paquete, Catarina M.
    Soares, Claudio M.
    Pacheco, Isabel
    Salgueiro, Carlos A.
    Louro, Ricardo O.
    [J]. JOURNAL OF BIOLOGICAL INORGANIC CHEMISTRY, 2009, 14 (03): : 375 - 385
  • [9] The main-chain dynamics of the dynamin pleckstrin homology (PH) domain in solution: Analysis of N-15 relaxation with monomer/dimer equilibration
    Fushman, D
    Cahill, S
    Cowburn, D
    [J]. JOURNAL OF MOLECULAR BIOLOGY, 1997, 266 (01) : 173 - 194
  • [10] Identification by NMR of the binding surface for the histidine-containing phosphocarrier protein HPr on the N-terminal domain of enzyme I of the Escherichia coli phosphotransferase system
    Garrett, DS
    Seok, YJ
    Peterkofsky, A
    Clore, GM
    Gronenborn, AM
    [J]. BIOCHEMISTRY, 1997, 36 (15) : 4393 - 4398