Atomic-resolution chemical characterization of (2x)72-kDa tryptophan synthase via four- and five-dimensional 1H-detected solid-state NMR

被引:33
作者
Klein, Alexander [1 ,2 ]
Rovo, Petra [1 ]
Sakhrani, Varun V. [3 ]
Wang, Yangyang [3 ]
Holmes, Jacob B. [3 ]
Liu, Viktoriia [3 ]
Skowronek, Patricia [1 ]
Kukuk, Laura [2 ]
Vasa, Suresh K. [1 ,2 ]
Guentert, Peter [4 ,5 ,6 ]
Mueller, Leonard J. [3 ]
Linser, Rasmus [1 ,2 ]
机构
[1] Ludwig Maximilians Univ Munchen, Dept Chem & Pharm, D-81377 Munich, Germany
[2] TU Dortmund Univ, Dept Chem & Chem Biol, D-44227 Dortmund, Germany
[3] Univ Calif Riverside, Dept Chem, Riverside, CA 92521 USA
[4] Goethe Univ, Inst Biophys Chem, D-60438 Frankfurt, Germany
[5] Eidgenoss TH ETH Zurich, Lab Phys Chem, CH-8093 Zurich, Switzerland
[6] Tokyo Metropolitan Univ, Dept Chem, Tokyo 1920397, Japan
关键词
solid-state NMR; NMR crystallography; tryptophan synthase; PLP-dependent enzymes; tautomerism; ANGLE-SPINNING NMR; H-1-H-1 DISTANCE RESTRAINTS; FULLY PROTONATED PROTEINS; BACKBONE ASSIGNMENT; RESONANCE ASSIGNMENT; PYRIDOXAL-PHOSPHATE; SCHIFF-BASE; SPECTROSCOPY; CRYSTALLOGRAPHY; DYNAMICS;
D O I
10.1073/pnas.2114690119
中图分类号
O [数理科学和化学]; P [天文学、地球科学]; Q [生物科学]; N [自然科学总论];
学科分类号
07 ; 0710 ; 09 ;
摘要
NMR chemical shifts provide detailed information on the chemical properties of molecules, thereby complementing structural data from techniques like X-ray crystallography and electron microscopy. Detailed analysis of protein NMR data, however, often hinges on comprehensive, site-specific assignment of backbone resonances, which becomes a bottleneck for molecular weights beyond 40 to 45 kDa. Here, we show that assignments for the (2x)72-kDa protein tryptophan synthase (665 amino acids per asymmetric unit) can be achieved via higher-dimensional, proton-detected, solid-state NMR using a single, 1-mg, uniformly labeled, microcrystalline sample. This framework grants access to atom-specific characterization of chemical properties and relaxation for the backbone and side chains, including those residues important for the catalytic turnover. Combined with first-principles calculations, the chemical shifts in the beta-subunit active site suggest a connection between active-site chemistry, the electrostatic environment, and catalytically important dynamics of the portal to the beta-subunit from solution.
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页数:9
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