Deep learning and virtual drug screening

被引:96
作者
Carpenter, Kristy A. [1 ,2 ]
Cohen, David S. [1 ,2 ]
Jarrell, Juliet T. [1 ,2 ]
Huang, Xudong [1 ,2 ]
机构
[1] Massachusetts Gen Hosp, Dept Psychiat, Neurochem Lab, Charlestown, MA 02129 USA
[2] Harvard Med Sch, Charlestown, MA 02129 USA
关键词
artificial intelligence; artificial neural networks; convolutional neural networks; deep learning; drug discovery; machine learning; multitask learning; virtual screening; QSAR MODEL; PREDICTION; IDENTIFICATION; VALIDATION; DISCOVERY; SELECTION; ACCURACY; RECEPTOR; MACHINE;
D O I
10.4155/fmc-2018-0314
中图分类号
R914 [药物化学];
学科分类号
100701 ;
摘要
Current drug development is still costly and slow given tremendous technological advancements in drug discovery and medicinal chemistry. Using machine learning (ML) to virtually screen compound libraries promises to fix this for generating drug leads more efficiently and accurately. Herein, we explain the broad basics and integration of both virtual screening (VS) and ML. We then discuss artificial neural networks (ANNs) and their usage for VS. The ANN is emerging as the dominant classifier for ML in general, and has proven its utility for both structure-based and ligand-based VS. Techniques such as dropout, multitask learning and convolution improve the performance of ANNs and enable them to take on chemical meaning when learning about the drug-target-binding activity of compounds.
引用
收藏
页码:2557 / 2567
页数:11
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