A combined model of hepatic polyamine and sulfur amino acid metabolism to analyze S-adenosyl methionine availability

被引:10
作者
Reyes-Palomares, Armando [1 ,2 ]
Montanez, Raul [1 ]
Sanchez-Jimenez, Francisca [1 ,2 ]
Angel Medina, Miguel [1 ,2 ]
机构
[1] Univ Malaga, Fac Sci, Dept Mol Biol & Biochem, E-29071 Malaga, Spain
[2] ISCIII, CIBERER, Unit 741, Malaga, Spain
关键词
Metabolic modeling; Systems biology; Polyamines; S-adenosyl methionine; Methionine cycle; Folate cycle; HUMAN HEPATOCELLULAR-CARCINOMA; ORNITHINE-DECARBOXYLASE; MATHEMATICAL-MODEL; RAT-LIVER; ADENOSYLTRANSFERASE GENES; DIFFERENTIAL EXPRESSION; ADENOSYLMETHIONINE; CELL; SPERMINE; NETWORK;
D O I
10.1007/s00726-011-1035-7
中图分类号
Q5 [生物化学]; Q7 [分子生物学];
学科分类号
071010 ; 081704 ;
摘要
Many molecular details remain to be uncovered concerning the regulation of polyamine metabolism. A previous model of mammalian polyamine metabolism showed that S-adenosyl methionine availability could play a key role in polyamine homeostasis. To get a deeper insight in this prediction, we have built a combined model by integration of the previously published polyamine model and one-carbon and glutathione metabolism model, published by different research groups. The combined model is robust and it is able to achieve physiological steady-state values, as well as to reproduce the predictions of the individual models. Furthermore, a transition between two versions of our model with new regulatory factors added properly simulates the switch in methionine adenosyl transferase isozymes occurring when the liver enters in proliferative conditions. The combined model is useful to support the previous prediction on the role of S-adenosyl methionine availability in polyamine homeostasis. Furthermore, it could be easily adapted to get deeper insights on the connections of polyamines with energy metabolism.
引用
收藏
页码:597 / 610
页数:14
相关论文
共 76 条
[61]   Control motifs for intracellular regulatory networks [J].
Rao, CV ;
Arkin, AP .
ANNUAL REVIEW OF BIOMEDICAL ENGINEERING, 2001, 3 :391-419
[62]   A mathematical model of the methionine cycle [J].
Reed, MC ;
Nijhout, HF ;
Sparks, R ;
Ulrich, CM .
JOURNAL OF THEORETICAL BIOLOGY, 2004, 226 (01) :33-43
[63]   A mathematical model of glutathione metabolism [J].
Reed, Michael C. ;
Thomas, Rachel L. ;
Pavisic, Jovana ;
James, S. Jill ;
Ulrich, Cornelia M. ;
Nijhout, H. Frederik .
THEORETICAL BIOLOGY AND MEDICAL MODELLING, 2008, 5
[64]   Systems biology metabolic modeling assistant: an ontology-based tool for the integration of metabolic data in kinetic modeling [J].
Reyes-Palomares, Armando ;
Montanez, Raul ;
Real-Chicharro, Alejando ;
Chniber, Othmane ;
Kerzazi, Amine ;
Navas-Delgado, Ismael ;
Medina, Miguel Angel ;
Aldana-Montes, Jose F. ;
Sanchez-Jimenez, Francisca .
BIOINFORMATICS, 2009, 25 (06) :834-835
[65]   Mathematical modeling of polyamine metabolism in mammals [J].
Rodriguez-Caso, Carlos ;
Montanez, Raul ;
Cascante, Marta ;
Sanchez-Jimenez, Francisca ;
Medina, Miguel A. .
JOURNAL OF BIOLOGICAL CHEMISTRY, 2006, 281 (31) :21799-21812
[66]   POLYAMINE METABOLISM IN MOUSE LIVER AFTER PARTIAL HEPATECTOMY [J].
RUSSELL, DH ;
MCVICKER, TA .
BIOCHIMICA ET BIOPHYSICA ACTA, 1971, 244 (01) :85-+
[67]   The usefulness of post-genomics tools for characterization of the amine cross-talk in mammalian cells [J].
Sanchez-Jimenez, F. ;
Montanez, R. ;
Correa-Fiz, F. ;
Rodriguez-Caso, C. ;
Urdiales, J. L. ;
Aldana, J. F. ;
Medina, M. A. .
BIOCHEMICAL SOCIETY TRANSACTIONS, 2007, 35 :381-385
[68]   Molecular profiling of hepatocellular carcinoma in mice with a chronic deficiency of hepatic S-adenosylmethionine:: Relevance in human liver diseases [J].
Santamaría, E ;
Muñoz, J ;
Fernández-Irigoyen, J ;
Sesma, L ;
Mora, MI ;
Berasain, C ;
Lu, SC ;
Mato, JM ;
Prieto, J ;
Avila, MA ;
Corrales, FJ .
JOURNAL OF PROTEOME RESEARCH, 2006, 5 (04) :944-953
[69]   Network motifs in the transcriptional regulation network of Escherichia coli [J].
Shen-Orr, SS ;
Milo, R ;
Mangan, S ;
Alon, U .
NATURE GENETICS, 2002, 31 (01) :64-68
[70]   Towards a genome-scale kinetic model of cellular metabolism [J].
Smallbone, Kieran ;
Simeonidis, Evangelos ;
Swainston, Neil ;
Mendes, Pedro .
BMC SYSTEMS BIOLOGY, 2010, 4