Status of the BOLD reference library of DNA barcodes of caddisflies (Insecta: Trichoptera) from the Western Balkans

被引:0
作者
Usanovic, Lejla [1 ]
Destanovic, Dalila [2 ]
Lasic, Lejla [1 ]
Kurtovic, Jasna Hanjalic [1 ]
Costa, Filipe O. [3 ,4 ]
Stroil, Belma Kalamujic [1 ]
机构
[1] Univ Sarajevo, Inst Genet Engn & Biotechnol, Sarajevo, Bosnia & Herceg
[2] Univ Vienna, Fac Life Sci, Vienna, Austria
[3] Univ Minho, Ctr Mol & Environm Biol CBMA, Braga, Portugal
[4] Univ Minho, Inst Sci & Innovat Biosustainabil IB S, Braga, Portugal
关键词
COIgene; BOLD; BAGS; diversity assessment; biomonitoring; aquatic insects; LIMNEPHILIDAE; LARVAE; DIVERSITY; BOSNIA; EPHEMEROPTERA; BIODIVERSITY; HERZEGOVINA; PLECOPTERA; KLAPALEK; MALICKY;
D O I
10.18054/pb.v124i3-4.24754
中图分类号
Q [生物科学];
学科分类号
07 ; 0710 ; 09 ;
摘要
Background and purpose: Available data in research literature suggest that the Western Balkan countries hold a rich diversity of caddisflies. Assess-ment and biomonitoring of such rich diversity could be facilitated through DNA-based high-throughput approaches like DNA metabarcoding that depend on the availability of comprehensive reference libraries.Materials and methods: We assessed the status of the COI barcode sequence data for a total of 112 caddisflies species in the investigated region by determining the gaps in representative sequences in the Barcode of Life Data System (BOLD) and examining the accuracy of available records us-ing the Barcode, Audit and Grade System (BAGS).Results: Results revealed a considerable underrepresentation of surveyed geographic region in BOLD records for the target insect group. Moreover, the large majority of the species records were rated "discordant" (72.80% grade E), and only 15.20% were classified as "consolidated concordance or basal concordance" (3.20% grade A and 12.00% B). Approximately 3.20% of the records pertaining to species occurring in multiple BINs (Barcode Index Number) and 8.80% were poorly represented (i.e., less than three specimens, grade D). A fraction of the species graded discordant were deemed concordant after detailed inspection of individual data, decreasing by 14.07%.Conclusions: The assessment of the current state of BOLD entries indi-cated that DNA barcoding is still not widely applied in Albania, Bosnia and Herzegovina, Montenegro, North Macedonia, Serbia, and Slovenia, emphasizing that Croatia has the most barcoded caddisflies species. The finding that available BOLD Trichopteran records for investigated countries were mainly graded as "discordant" indicates the need for better quality control of reference libraries.
引用
收藏
页码:107 / 114
页数:8
相关论文
共 40 条
  • [31] Butterfly-parasitoid-hostplant interactions in Western Palaearctic Hesperiidae: a DNA barcoding reference library
    Toro-Delgado, Eric
    Hernandez-Roldan, Juan
    Dinca, Vlad
    Carlos Vicente, Juan
    Shaw, Mark R.
    Quicke, Donald L. J.
    Voda, Raluca
    Albrecht, Martin
    Fernandez-Triana, Jose
    Vidiella, Blai
    Valverde, Sergi
    Dapporto, Leonardo
    Hebert, Paul D. N.
    Talavera, Gerard
    Vila, Roger
    ZOOLOGICAL JOURNAL OF THE LINNEAN SOCIETY, 2022, 196 (02) : 757 - 774
  • [32] Three new species of Byrsopteryx Flint microcaddisflies from Peru (Insecta: Trichoptera) including DNA-based larval associations
    Santos, Allan P. M.
    Takiya, Daniela Maeda
    PEERJ, 2021, 9
  • [33] DNA barcoding of Chironomidae from the Lake Skadar region: Reference library and a comparative analysis of the European fauna
    Gadawski, Piotr
    Montagna, Matteo
    Rossaro, Bruno
    Gilka, Wojciech
    Pesic, Vladimir
    Grabowski, Michal
    Magoga, Giulia
    DIVERSITY AND DISTRIBUTIONS, 2022, 28 (12) : 2838 - 2857
  • [34] The first DNA barcode library of Chironomidae from the Tibetan Plateau with an evaluation of the status of the public databases
    Han, Wu
    Tang, Hongqu
    Wei, Lili
    Zhang, Enlou
    ECOLOGY AND EVOLUTION, 2023, 13 (02):
  • [35] DNA barcoding fishes from the Congo and the Lower Guinean provinces: Assembling a reference library for poorly inventoried fauna
    Sonet, Gontran
    Snoeks, Jos
    Nagy, Zoltan T.
    Vreven, Emmanuel
    Boden, Gert
    Breman, Floris C.
    Decru, Eva
    Hanssens, Mark
    Zamba, Armel Ibala
    Jordaens, Kurt
    Mamonekene, Victor
    Musschoot, Tobias
    Van Houdt, Jeroen
    Van Steenberge, Maarten
    Wamuini, Soleil Lunkayilakio
    Verheyen, Erik
    MOLECULAR ECOLOGY RESOURCES, 2019, 19 (03) : 728 - 743
  • [36] Initiating a DNA Barcoding Reference Library of Stony Corals from the Gulf of Eilat (Red Sea)
    Rachmilovitz, Elad Nehoray
    Shabbat, Omri
    Yerushalmy, Maayan
    Rinkevich, Baruch
    JOURNAL OF MARINE SCIENCE AND ENGINEERING, 2022, 10 (12)
  • [37] Starting a DNA barcode reference library for shallow water polychaetes from the southern European Atlantic coast
    Lobo, Jorge
    Teixeira, Marcos A. L.
    Borges, Luisa M. S.
    Ferreira, Maria S. G.
    Hollatz, Claudia
    Gomes, Pedro T.
    Sousa, Ronaldo
    Ravara, Ascensao
    Costa, Maria H.
    Costa, Filipe O.
    MOLECULAR ECOLOGY RESOURCES, 2016, 16 (01) : 298 - 313
  • [38] The Taxonomic Status of Japanese Threadfin Bream Nemipterus japonicus(Bloch, 1791)(Perciformes: Nemipteridae) with a Redescription of this Species from the South China Sea Based on Morphology and DNA Barcodes
    NING Ping
    SHA Zhongli
    Paul D. N. HEBERT
    Barry RUSSELL
    Journal of Ocean University of China, 2015, 14 (01) : 178 - 184
  • [39] The taxonomic status of Japanese threadfin bream Nemipterus japonicus (Bloch, 1791) (Perciformes: Nemipteridae) with a redescription of this species from the south china sea based on morphology and DNA barcodes
    Ping Ning
    Zhongli Sha
    Paul D. N. Hebert
    Barry Russell
    Journal of Ocean University of China, 2015, 14 : 178 - 184
  • [40] The taxonomic status of Japanese threadfin bream Nemipterus japonicus (Bloch, 1791) (Perciformes: Nemipteridae) with a redescription of this species from the south china sea based on morphology and DNA barcodes
    Ning Ping
    Sha Zhongli
    Hebert, Paul D. N.
    Russell, Barry
    JOURNAL OF OCEAN UNIVERSITY OF CHINA, 2015, 14 (01) : 178 - 184