We point out that normal modes and frequencies of molecules and molecular complexes can be obtained directly from a harmonically driven molecular dynamics calculation. We illustrate this approach for HOD and H5O2+ and then discuss its potential advantages over the standard Hessian-based approach for large molecules. (C) 2003 American Institute of Physics.
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Ochanomizu Univ, Grad Sch Humanities & Sci, Div Life Sci, Bunkyo Ku, Tokyo 1128610, JapanWaseda Univ, Sch Social Sci, Shinjuku Ku, Tokyo 1698050, Japan
Tsuchiya, Yuko
Kinoshita, Kengo
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Tohoku Univ, Grad Sch Informat Sci, Dept Appl Informat Sci, Sendai, Miyagi 9808579, JapanWaseda Univ, Sch Social Sci, Shinjuku Ku, Tokyo 1698050, Japan
Kinoshita, Kengo
Endo, Shigeru
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Kitasato Univ, Sch Sci, Dept Phys, Sagamihara, Kanagawa 2520373, JapanWaseda Univ, Sch Social Sci, Shinjuku Ku, Tokyo 1698050, Japan
Endo, Shigeru
Wako, Hiroshi
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Waseda Univ, Sch Social Sci, Shinjuku Ku, Tokyo 1698050, JapanWaseda Univ, Sch Social Sci, Shinjuku Ku, Tokyo 1698050, Japan
机构:
Univ York, Dept Chem, Struct Biol Lab, York YO10 5DD, N Yorkshire, EnglandUniv York, Dept Chem, Struct Biol Lab, York YO10 5DD, N Yorkshire, England
Barton, NP
Verma, CS
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Univ York, Dept Chem, Struct Biol Lab, York YO10 5DD, N Yorkshire, EnglandUniv York, Dept Chem, Struct Biol Lab, York YO10 5DD, N Yorkshire, England
Verma, CS
Caves, LSA
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Univ York, Dept Chem, Struct Biol Lab, York YO10 5DD, N Yorkshire, EnglandUniv York, Dept Chem, Struct Biol Lab, York YO10 5DD, N Yorkshire, England