Rewriting the transcriptome: adenosine-to-inosine RNA editing by ADARs

被引:168
作者
Walkley, Carl R. [1 ,2 ]
Li, Jin Billy [3 ]
机构
[1] St Vincents Inst Med Res, Fitzroy, Vic 3065, Australia
[2] Univ Melbourne, Dept Med, St Vincents Hosp, Fitzroy, Vic 3065, Australia
[3] Stanford Univ, Dept Genet, Stanford, CA 94305 USA
基金
英国医学研究理事会; 澳大利亚国家健康与医学研究理事会;
关键词
AICARDI-GOUTIERES SYNDROME; SYSTEMATIC IDENTIFICATION; ACCURATE IDENTIFICATION; BIASED HYPERMUTATION; WIDE IDENTIFICATION; UNWINDING ACTIVITY; SELF-RENEWAL; GLUR-B; DEAMINASE; SITES;
D O I
10.1186/s13059-017-1347-3
中图分类号
Q81 [生物工程学(生物技术)]; Q93 [微生物学];
学科分类号
071005 ; 0836 ; 090102 ; 100705 ;
摘要
One of the most prevalent forms of post-transcritpional RNA modification is the conversion of adenosine nucleosides to inosine (A-to-I), mediated by the ADAR family of enzymes. The functional requirement and regulatory landscape for the majority of A-to-I editing events are, at present, uncertain. Recent studies have identified key in vivo functions of ADAR enzymes, informing our understanding of the biological importance of A-to-I editing. Large-scale studies have revealed how editing is regulated both in cis and in trans. This review will explore these recent studies and how they broaden our understanding of the functions and regulation of ADAR-mediated RNA editing.
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页数:13
相关论文
共 157 条
[1]   The majority of transcripts in the squid nervous system are extensively recoded by A-to-I RNA editing [J].
Alon, Shahar ;
Garrett, Sandra C. ;
Levanon, Erez Y. ;
Olson, Sara ;
Graveley, Brenton R. ;
Rosenthal, Joshua J. C. ;
Eisenberg, Eli .
ELIFE, 2015, 4
[2]   Systematic identification of edited microRNAs in the human brain [J].
Alon, Shahar ;
Mor, Eyal ;
Vigneault, Francois ;
Church, George M. ;
Locatelli, Franco ;
Galeano, Federica ;
Gallo, Angela ;
Shomron, Noam ;
Eisenberg, Eli .
GENOME RESEARCH, 2012, 22 (08) :1533-1540
[3]   Genomic analysis of ADAR1 binding and its involvement in multiple RNA processing pathways [J].
Bahn, Jae Hoon ;
Ahn, Jaegyoon ;
Lin, Xianzhi ;
Zhang, Qing ;
Lee, Jae-Hyung ;
Civelek, Mete ;
Xiao, Xinshu .
NATURE COMMUNICATIONS, 2015, 6
[4]   Accurate identification of A-to-I RNA editing in human by transcriptome sequencing [J].
Bahn, Jae Hoon ;
Lee, Jae-Hyung ;
Li, Gang ;
Greer, Christopher ;
Peng, Guangdun ;
Xiao, Xinshu .
GENOME RESEARCH, 2012, 22 (01) :142-150
[5]   The Evolutionary Landscape of Alternative Splicing in Vertebrate Species [J].
Barbosa-Morais, Nuno L. ;
Irimia, Manuel ;
Pan, Qun ;
Xiong, Hui Y. ;
Gueroussov, Serge ;
Lee, Leo J. ;
Slobodeniuc, Valentina ;
Kutter, Claudia ;
Watt, Stephen ;
Colak, Recep ;
Kim, TaeHyung ;
Misquitta-Ali, Christine M. ;
Wilson, Michael D. ;
Kim, Philip M. ;
Odom, Duncan T. ;
Frey, Brendan J. ;
Blencowe, Benjamin J. .
SCIENCE, 2012, 338 (6114) :1587-1593
[6]   AN UNWINDING ACTIVITY THAT COVALENTLY MODIFIES ITS DOUBLE-STRANDED-RNA SUBSTRATE [J].
BASS, BL ;
WEINTRAUB, H .
CELL, 1988, 55 (06) :1089-1098
[7]   RNA editing by adenosine deaminases that act on RNA [J].
Bass, BL .
ANNUAL REVIEW OF BIOCHEMISTRY, 2002, 71 :817-846
[8]   A DEVELOPMENTALLY REGULATED ACTIVITY THAT UNWINDS RNA DUPLEXES [J].
BASS, BL ;
WEINTRAUB, H .
CELL, 1987, 48 (04) :607-613
[9]   BIASED HYPERMUTATION OF VIRAL-RNA GENOMES COULD BE DUE TO UNWINDING MODIFICATION OF DOUBLE-STRANDED-RNA [J].
BASS, BL ;
WEINTRAUB, H ;
CATTANEO, R ;
BILLETER, MA .
CELL, 1989, 56 (03) :331-331
[10]   A-to-I RNA editing occurs at over a hundred million genomic sites, located in a majority of human genes [J].
Bazak, Lily ;
Haviv, Ami ;
Barak, Michal ;
Jacob-Hirsch, Jasmine ;
Deng, Patricia ;
Zhang, Rui ;
Isaacs, Farren J. ;
Rechavi, Gideon ;
Li, Jin Billy ;
Eisenberg, Eli ;
Levanon, Erez Y. .
GENOME RESEARCH, 2014, 24 (03) :365-376