C-N Coupling of DNA-Conjugated (Hetero)aryl Bromides and Chlorides for DNA-Encoded Chemical Library Synthesis

被引:48
作者
Chen, Ying-Chu [1 ]
Faver, John C. [1 ]
Ku, Angela F. [1 ]
Miklossy, Gabriella [1 ]
Riehle, Kevin [1 ]
Bohren, Kurt M. [1 ]
Ucisik, Melek N. [1 ]
Matzuk, Martin M. [1 ]
Yu, Zhifeng [1 ]
Simmons, Nicholas [1 ]
机构
[1] Baylor Coll Med, Ctr Drug Discovery, Dept Pathol & Immunol, Houston, TX 77030 USA
基金
美国国家卫生研究院;
关键词
CATALYZED AMINATION; BOND FORMATION; PALLADIUM; PD; SELECTION; DESIGN; DISCOVERY; LIGANDS; WATER;
D O I
10.1021/acs.bioconjchem.9b00863
中图分类号
Q5 [生物化学];
学科分类号
071010 ; 081704 ;
摘要
DNA-encoded chemical library (DECL) screens are a rapid and economical tool to identify chemical starting points for drug discovery. As a robust transformation for drug discovery, palladium-catalyzed C-N coupling is a valuable synthetic method for the construction of DECL chemical matter; however, currently disclosed methods have only been demonstrated on DNA-attached (hetero)aromatic iodide and bromide electrophiles. We developed conditions utilizing an N-heterocyclic carbene-palladium catalyst that extends this reaction to the coupling of DNA-conjugated (hetero)aromatic chlorides with (hetero)aromatic and select aliphatic amine nucleophiles. In addition, we evaluated steric and electronic effects within this catalyst series, carried out a large substrate scope study on two representative (hetero)aryl bromides, and applied this newly developed method within the construction of a 63 million-membered DECL.
引用
收藏
页码:770 / 780
页数:11
相关论文
共 54 条
[1]   Design and synthesis of a novel DNA-encoded chemical library using Diels-Alder cycloadditions [J].
Buller, Fabian ;
Mannocci, Luca ;
Zhang, Yixin ;
Dumelin, Christoph E. ;
Scheuermann, Joerg ;
Neri, Dario .
BIOORGANIC & MEDICINAL CHEMISTRY LETTERS, 2008, 18 (22) :5926-5931
[2]   Synthesis of C3-Alkylated Indoles on DNA via Indolyl Alcohol Formation Followed by Metal-Free Transfer Hydrogenation [J].
Cai, Pinwen ;
Yang, Guanyu ;
Zhao, Lanzhou ;
Wan, Jinqiao ;
Li, Jin ;
Liu, Guansai .
ORGANIC LETTERS, 2019, 21 (17) :6633-6637
[3]   Design, synthesis and selection of DNA-encoded small-molecule libraries [J].
Clark, Matthew A. ;
Acharya, Raksha A. ;
Arico-Muendel, Christopher C. ;
Belyanskaya, Svetlana L. ;
Benjamin, Dennis R. ;
Carlson, Neil R. ;
Centrella, Paolo A. ;
Chiu, Cynthia H. ;
Creaser, Steffen P. ;
Cuozzo, John W. ;
Davie, Christopher P. ;
Ding, Yun ;
Franklin, G. Joseph ;
Franzen, Kurt D. ;
Gefter, Malcolm L. ;
Hale, Steven P. ;
Hansen, Nils J. V. ;
Israel, David I. ;
Jiang, Jinwei ;
Kavarana, Malcolm J. ;
Kelley, Michael S. ;
Kollmann, Christopher S. ;
Li, Fan ;
Lind, Kenneth ;
Mataruse, Sibongile ;
Medeiros, Patricia F. ;
Messer, Jeffrey A. ;
Myers, Paul ;
O'Keefe, Heather ;
Oliff, Matthew C. ;
Rise, Cecil E. ;
Satz, Alexander L. ;
Skinner, Steven R. ;
Svendsen, Jennifer L. ;
Tang, Lujia ;
van Vloten, Kurt ;
Wagner, Richard W. ;
Yao, Gang ;
Zhao, Baoguang ;
Morgan, Barry A. .
NATURE CHEMICAL BIOLOGY, 2009, 5 (09) :647-654
[4]   DNA-templated combinatorial assembly of small molecule fragments amenable to selection/amplification cycles [J].
Daguer, Jean Pierre ;
Ciobanu, Mihai ;
Alvarez, Susana ;
Barluenga, Sofia ;
Winssinger, Nicolas .
CHEMICAL SCIENCE, 2011, 2 (04) :625-632
[5]   Effect of water on the palladium-catalyzed amidation of aryl bromides [J].
Dallas, AS ;
Gothelf, KV .
JOURNAL OF ORGANIC CHEMISTRY, 2005, 70 (08) :3321-3323
[6]   Mild and Efficient Palladium-Mediated C-N Cross-Coupling Reaction between DNA-Conjugated Aryl Bromides and Aromatic Amines [J].
de Pedro Beato, Eduardo ;
Priego, Julian ;
Gironda-Martinez, Adrian ;
Gonzalez, Fernando ;
Benavides, Jesus ;
Blas, Jesus ;
Dolores Martin-Ortega, Maria ;
Angel Toledo, Miguel ;
Ezquerra, Jesus ;
Torrado, Alicia .
ACS COMBINATORIAL SCIENCE, 2019, 21 (02) :69-74
[7]   Automated screening for small organic ligands using DNA-encoded chemical libraries [J].
Decurtins, Willy ;
Wichert, Moreno ;
Franzini, Raphael M. ;
Buller, Fabian ;
Stravs, Michael A. ;
Zhang, Yixin ;
Neri, Dario ;
Scheuermann, Joerg .
NATURE PROTOCOLS, 2016, 11 (04) :764-780
[8]   Robust Suzuki-Miyaura Cross-Coupling on DNA-Linked Substrates [J].
Ding, Yun ;
Clark, Matthew A. .
ACS COMBINATORIAL SCIENCE, 2015, 17 (01) :1-4
[9]   Multistep Synthesis of 1,2,4-Oxadiazoles via DNA-Conjugated Aryl Nitrile Substrates [J].
Du, Huang-Chi ;
Bangs, Madison C. ;
Simmons, Nicholas ;
Matzuk, Martin M. .
BIOCONJUGATE CHEMISTRY, 2019, 30 (05) :1304-1308
[10]   A Mild, DNA-Compatible Nitro Reduction Using B2(OH)4 [J].
Du, Huang-Chi ;
Simmons, Nicholas ;
Faver, John C. ;
Yu, Zhifeng ;
Palaniappan, Murugesan ;
Riehle, Kevin ;
Matzuk, Martin M. .
ORGANIC LETTERS, 2019, 21 (07) :2194-2199