Disease genes and intracellular protein networks

被引:17
作者
Bortoluzzi, S
Romualdi, C
Bisognin, A
Danieli, GA
机构
[1] Univ Padua, Dept Biol, I-35131 Padua, Italy
[2] Univ Padua, Ric Interdipartimentale Biotecnol Innovat CRIBI, I-35131 Padua, Italy
关键词
gene expression; protein network; Mendelian disease;
D O I
10.1152/physiolgenomics.00095.2003
中图分类号
Q2 [细胞生物学];
学科分类号
071009 ; 090102 ;
摘要
By a computational approach we reconstructed genomic transcriptional profiles of 19 different adult human tissues, based on information on activity of 27,924 genes obtained from unbiased UniGene cDNA libraries. In each considered tissue, a small number of genes resulted highly expressed or "tissue specific." Distribution of gene expression levels in a tissue appears to follow a power law, thus suggesting a correspondence between transcriptional profile and "scale-free" topology of protein networks. The expression of 737 genes involved in Mendelian diseases was analyzed, compared with a large reference set of known human genes. Disease genes resulted significantly more expressed than expected. The possible correspondence of their products to important nodes of intracellular protein network is suggested. Auto-organization of the protein network, its stability in time in the differentiated state, and relationships with the degree of genetic variability at genome level are discussed.
引用
收藏
页码:223 / 227
页数:5
相关论文
共 27 条
  • [1] Error and attack tolerance of complex networks
    Albert, R
    Jeong, H
    Barabási, AL
    [J]. NATURE, 2000, 406 (6794) : 378 - 382
  • [2] ESTABLISHING A HUMAN TRANSCRIPT MAP
    BOGUSKI, MS
    SCHULER, GD
    [J]. NATURE GENETICS, 1995, 10 (04) : 369 - 371
  • [3] A computational reconstruction of the adult human heart transcriptional profile
    Bortoluzzi, S
    d'Alessi, F
    Danieli, GA
    [J]. JOURNAL OF MOLECULAR AND CELLULAR CARDIOLOGY, 2000, 32 (11) : 1931 - 1938
  • [4] Bortoluzzi S, 2000, INVEST OPHTH VIS SCI, V41, P3305
  • [5] The human adult skeletal muscle transcriptional profile reconstructed by a novel computational approach
    Bortoluzzi, S
    d'Alessi, F
    Romualdi, C
    Danieli, GA
    [J]. GENOME RESEARCH, 2000, 10 (03) : 344 - 349
  • [6] Protein function in the post-genomic era
    Eisenberg, D
    Marcotte, EM
    Xenarios, I
    Yeates, TO
    [J]. NATURE, 2000, 405 (6788) : 823 - 826
  • [7] Functional organization of the yeast proteome by systematic analysis of protein complexes
    Gavin, AC
    Bösche, M
    Krause, R
    Grandi, P
    Marzioch, M
    Bauer, A
    Schultz, J
    Rick, JM
    Michon, AM
    Cruciat, CM
    Remor, M
    Höfert, C
    Schelder, M
    Brajenovic, M
    Ruffner, H
    Merino, A
    Klein, K
    Hudak, M
    Dickson, D
    Rudi, T
    Gnau, V
    Bauch, A
    Bastuck, S
    Huhse, B
    Leutwein, C
    Heurtier, MA
    Copley, RR
    Edelmann, A
    Querfurth, E
    Rybin, V
    Drewes, G
    Raida, M
    Bouwmeester, T
    Bork, P
    Seraphin, B
    Kuster, B
    Neubauer, G
    Superti-Furga, G
    [J]. NATURE, 2002, 415 (6868) : 141 - 147
  • [8] Correlation between transcriptome and interactome mapping data from Saccharomyces cerevisiae
    Ge, H
    Liu, ZH
    Church, GM
    Vidal, M
    [J]. NATURE GENETICS, 2001, 29 (04) : 482 - 486
  • [9] REDUNDANT FUNCTIONS OF THE GENES KNIRPS AND KNIRPS-RELATED FOR THE ESTABLISHMENT OF ANTERIOR DROSOPHILA HEAD STRUCTURES
    GONZALEZGAITAN, M
    ROTHE, M
    WIMMER, EA
    TAUBERT, H
    JACKLE, H
    [J]. PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA, 1994, 91 (18) : 8567 - 8571
  • [10] A relationship between gene expression and protein interactions on the proteome scale:: analysis of the bacteriophage T7 and the yeast Saccharomyces cerevisiae
    Grigoriev, A
    [J]. NUCLEIC ACIDS RESEARCH, 2001, 29 (17) : 3513 - 3519