Exploration of the microbiome community for saliva, skin, and a mixture of both from a population living in Guangdong

被引:19
作者
Yao, Ting [1 ]
Han, Xiaolong [2 ]
Guan, Tianshan [1 ]
Zhai, Chuangyan [1 ]
Liu, Changhui [2 ]
Liu, Chao [1 ,2 ]
Zhu, Bofeng [1 ]
Chen, Ling [1 ]
机构
[1] Southern Med Univ, Sch Forens Med, Dept Forens Genet, Multiom Innovat Res Ctr Forens Identificat, Guangzhou 510515, Peoples R China
[2] Guangzhou Forens Sci Inst, Guangzhou 510030, Peoples R China
基金
中国国家自然科学基金;
关键词
Forensic genetics; Microbiome; High-throughput sequencing; Body fluid and tissue identification; Mixed body fluid or tissue; BODY-FLUID IDENTIFICATION; SAMPLES; DNA;
D O I
10.1007/s00414-020-02329-6
中图分类号
DF [法律]; D9 [法律]; R [医药、卫生];
学科分类号
0301 ; 10 ;
摘要
The identification of biological traces provides vital evidence in forensic reconstruction at crime scenes, especially in sexual offences. Compared with traditional presumptive or confirmatory methods, the microbiome-based method has been proven to be of great value in body fluid identification. Mixture of body fluids or tissue is common in sexual assault cases; thus, it is essential to determine the sources of mixed samples. In this study, 60 samples consisting of skin, saliva, and a mixed model of saliva deposited on facial skin were collected from a population living in Guangdong. Through 16s rDNA high-throughput sequencing, we identified the predominant microbes in saliva samples, viz.,Haemophilus parainfluenzae T3T1,Neisseria flava,Gemella haemolysans,Prevotella melaninogenica, andActinomyces odontolyticus; in skin samples,Cutibacterium acnesandCorynebacterium tuberculostearicumwere the predominant species. The microbial composition of the same body fluid or tissue is similar in different individuals. However, among different body fluids or tissue, the composition of microflora in saliva is more stable than that on skin. Additionally, the microbial community in the mixed model of saliva deposited on facial skin from the same and different individuals was clearly determined by the constituent fluids or tissue, apart from the differences among the donors. Overall, the microbiome-based method may have good potential as a tool for identifying single and mixed body fluid or tissue.
引用
收藏
页码:53 / 62
页数:10
相关论文
共 32 条
[1]   Metabolic Reconstruction for Metagenomic Data and Its Application to the Human Microbiome [J].
Abubucker, Sahar ;
Segata, Nicola ;
Goll, Johannes ;
Schubert, Alyxandria M. ;
Izard, Jacques ;
Cantarel, Brandi L. ;
Rodriguez-Mueller, Beltran ;
Zucker, Jeremy ;
Thiagarajan, Mathangi ;
Henrissat, Bernard ;
White, Owen ;
Kelley, Scott T. ;
Methe, Barbara ;
Schloss, Patrick D. ;
Gevers, Dirk ;
Mitreva, Makedonka ;
Huttenhower, Curtis .
PLOS COMPUTATIONAL BIOLOGY, 2012, 8 (06)
[2]   Body fluid identification in forensics [J].
An, Ja Hyun ;
Shin, Kyoung-Jin ;
Yang, Woo Ick ;
Lee, Hwan Young .
BMB REPORTS, 2012, 45 (10) :545-553
[3]   The human skin microbiome [J].
Byrd, Allyson L. ;
Belkaid, Yasmine ;
Segre, Julia A. .
NATURE REVIEWS MICROBIOLOGY, 2018, 16 (03) :143-155
[4]   Jaccard/Tanimoto similarity test and estimation methods for biological presence-absence data [J].
Chung, Neo Christopher ;
Miasojedow, Blazej ;
Startek, Michal ;
Gambin, Anna .
BMC BIOINFORMATICS, 2019, 20 (Suppl 15)
[5]   Microbiome-based body fluid identification of samples exposed to indoor conditions [J].
Dobay, Akos ;
Haas, Cordula ;
Fucile, Geoffrey ;
Downey, Nora ;
Morrison, Hilary G. ;
Kratzer, Adelgunde ;
Arora, Natasha .
FORENSIC SCIENCE INTERNATIONAL-GENETICS, 2019, 40 :105-113
[6]   Accuracy of microbial community diversity estimated by closed- and open-reference OTUs [J].
Edgar, Robert C. .
PEERJ, 2017, 5
[7]  
Edgar RC, 2013, NAT METHODS, V10, P996, DOI [10.1038/NMETH.2604, 10.1038/nmeth.2604]
[8]   Microbe-host interplay in atopic dermatitis and psoriasis [J].
Fyhrquist, Nanna ;
Muirhead, Gareth ;
Prast-Nielsen, Stefanie ;
Jeanmougin, Marine ;
Olah, Peter ;
Skoog, Tiina ;
Jules-Clement, Gerome ;
Feld, Micha ;
Barrientos-Somarribas, Mauricio ;
Sinkko, Hanna ;
van den Bogaard, Ellen H. ;
Zeeuwen, Patrick L. J. M. ;
Rikken, Gijs ;
Schalkwijk, Joost ;
Niehues, Hanna ;
Daeubener, Walter ;
Eller, Silvia Kathrin ;
Alexander, Helen ;
Pennino, Davide ;
Suomela, Sari ;
Tessas, Ioannis ;
Lybeck, Emilia ;
Baran, Anna M. ;
Darban, Hamid ;
Gangwar, Roopesh Singh ;
Gerstel, Ulrich ;
Jahn, Katharina ;
Karisola, Piia ;
Yan, Lee ;
Hansmann, Britta ;
Katayama, Shintaro ;
Meller, Stephan ;
Bylesjo, Max ;
Hupe, Philippe ;
Levi-Schaffer, Francesca ;
Greco, Dario ;
Ranki, Annamari ;
Schroeder, Jens M. ;
Barker, Jonathan ;
Kere, Juha ;
Tsoka, Sophia ;
Lauerma, Antti ;
Soumelis, Vassili ;
Nestle, Frank O. ;
Homeyl, Bernhard ;
Andersson, Bjorn ;
Alenius, Harri .
NATURE COMMUNICATIONS, 2019, 10 (1)
[9]   The skin microbiome: potential for novel diagnostic and therapeutic approaches to cutaneous disease [J].
Grice, Elizabeth A. .
SEMINARS IN CUTANEOUS MEDICINE AND SURGERY, 2014, 33 (02) :98-103
[10]   Topographical and Temporal Diversity of the Human Skin Microbiome [J].
Grice, Elizabeth A. ;
Kong, Heidi H. ;
Conlan, Sean ;
Deming, Clayton B. ;
Davis, Joie ;
Young, Alice C. ;
Bouffard, Gerard G. ;
Blakesley, Robert W. ;
Murray, Patrick R. ;
Green, Eric D. ;
Turner, Maria L. ;
Segre, Julia A. .
SCIENCE, 2009, 324 (5931) :1190-1192