Crystallization and preliminary neutron diffraction studies of ADP-ribose pyrophosphatase-I from Thermus thermophilus HB8

被引:1
|
作者
Okazaki, Nobuo [1 ]
Adachi, Motoyasu [1 ]
Tamada, Taro [1 ]
Kurihara, Kazuo [1 ]
Ooga, Takushi [2 ]
Kamiya, Nobuo [3 ,4 ]
Kuramitsu, Seiki [2 ]
Kuroki, Ryota [1 ]
机构
[1] Japan Atom Energy Agcy, Quantum Beam Sci Directorate, Tokai, Ibaraki 3191195, Japan
[2] Osaka Univ, Grad Sch Sci, Toyonaka, Osaka 5630043, Japan
[3] Osaka City Univ, Dept Chem, Grad Sch Sci, Sumiyoshi, Osaka 5588585, Japan
[4] Osaka City Univ, OCU Adv Res Inst Nat Sci & Technol, Sumiyoshi, Osaka 5588585, Japan
来源
ACTA CRYSTALLOGRAPHICA SECTION F-STRUCTURAL BIOLOGY COMMUNICATIONS | 2012年 / 68卷
关键词
ADP-ribose pyrophosphatase; Ndx4; neutron diffraction; Thermus thermophilus; X-RAY; STRUCTURAL BASIS; MECHANISM; CRYSTALLOGRAPHY; SUBSTRATE; PROTEINS;
D O I
10.1107/S1744309111044551
中图分类号
Q5 [生物化学];
学科分类号
071010 ; 081704 ;
摘要
ADP-ribose pyrophosphatase-I from Thermus thermophilus HB8 (TtADPRase-I) prevents the intracellular accumulation of ADP-ribose by hydrolyzing it to AMP and ribose 5'-phosphate. To understand the catalytic mechanism of TtADPRase-I, it is necessary to investigate the role of glutamates and metal ions as well as the coordination of water molecules located at the active site. A macroseeding method was developed in order to obtain a large TtADPRase-I crystal which was suitable for a neutron diffraction study to provide structural information. Neutron and X-ray diffraction experiments were performed at room temperature using the same crystal. The crystal diffracted to 2.1 and 1.5 angstrom resolution in the neutron and X-ray diffraction experiments, respectively. The crystal belonged to the primitive space group P3221, with unit-cell parameters a = b = 50.7, c = 119 angstrom.
引用
收藏
页码:49 / 52
页数:4
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