Flavobacterium effusum sp nov., isolated from a freshwater river

被引:4
作者
Chen, Wen-Ming [1 ]
Su, Ching-Ling [2 ]
Kwon, Soon-Wo [3 ]
Sheu, Shih-Yi [2 ]
机构
[1] Natl Kaohsiung Univ Sci & Technol, Lab Microbiol, Dept Seafood Sci, 142 Hai Chuan Rd, Kaohsiung 811, Taiwan
[2] Natl Kaohsiung Univ Sci & Technol, Dept Marine Biotechnol, 142 Hai Chuan Rd, Kaohsiung 811, Taiwan
[3] Natl Inst Agr Sci, Agr Microbiol Div, Rural Dev Adm, Jeollabuk Do 55365, South Korea
关键词
Flavobacterium effusum; new taxa; Bacteroidetes; Flavobacteriaceae; freshwater; GENUS FLAVOBACTERIUM; EMENDED DESCRIPTION; DEOXYRIBONUCLEIC-ACID; SHRIMP CULTURE; SOIL; FAMILY; DENITRIFICANS; SEQUENCES; BACTERIA; DATABASE;
D O I
10.1099/ijsem.0.002944
中图分类号
Q93 [微生物学];
学科分类号
071005 ; 100705 ;
摘要
A yellowish-orange-coloured bacterial strain, PSI-22(T), was isolated from a freshwater river in Taiwan. Phylogenetic analyses based on 16S rRNA gene sequences showed that strain PSI-22(T) belonged to the genus Flavobacterium and showed the highest identity with respect to Flavobacterium dispersum MVW-23(T) (98.0 %), Flavobacterium tistrianum GB 56.1(T) (97.1 %), Flavobacterium denitrificans ED5(T) (97.1 %) and Flavobacterium daemonense THG-DJ7(T) (97.0 %) and less than 97 % to other members of the genus. Cells of strainPSI-22(T) were Gram-negative, strictly aerobic, motile by gliding and rod-shaped. Optimal growth occurred at 30 degrees C, pH 6 and in the presence of 0.5% NaCl. Strain PSI-22(T) contained iso-C-15:0 and summed feature 3 (C-16:1 omega 6c and/or C-16:1 omega 7c) as the predominant fatty acids. The polar lipid profile consisted of phosphatidylethanolamine, one uncharacterized aminophospholipid, one uncharacterized aminophosphoglycolipid, two uncharacterized aminolipids, one uncharacterized phospholipid and one uncharacterized lipid. The major polyamine was homospermidine. The major isoprenoid quinone was MK-6 and the DNA G+C content of the genomic DNA was 41.4 mol%. The DNA-DNA hybridization value for strain PSI-22(T) with F. dispersum BCRC 80978(T), F. tistrianum KCTC 42679(T), F. denitrificans DSM 15936(T) and F. daemonense KACC 17651(T) was less than 30 %. On the basis of the phylogenetic inference and phenotypic data, strain PSI-22(T) should be classified as a novel species, for which the name Flavobacterium effusum sp. nov. is proposed. The type strain is PSI-22(T) (=BCRC 80973(T)=LMG 29553(T)=KCTC 52233(T)).
引用
收藏
页码:3111 / 3117
页数:7
相关论文
共 48 条
[1]  
[Anonymous], 2011, BERGEYS MANUAL SYSTE
[2]   The phylogeny of the genera Chryseomonas, Flavimonas, and Pseudomonas supports synonymy of these three genera [J].
Anzai, Y ;
Kudo, Y ;
Oyaizu, H .
INTERNATIONAL JOURNAL OF SYSTEMATIC BACTERIOLOGY, 1997, 47 (02) :249-251
[3]  
Bergey DH, 1923, Bergey's Manual of Determinative Bacteriology, P97
[4]  
Bernardet J.-F., 2011, BERGEYS MANUAL SYSTE, V4, P112
[5]  
Bernardet J.-F., 2006, The Prokaryotes, V7, P481
[6]   Cutting a gordian knot: Emended classification and description of the genus Flavobacterium, emended description of the family Flavobacteriaceae, and proposal of Flavobacterium hydatis nom nov (basonym, Cytophaga aquatilis Strohl and Tait 1978) [J].
Bernardet, JF ;
Segers, P ;
Vancanneyt, M ;
Berthe, F ;
Kersters, K ;
Vandamme, P .
INTERNATIONAL JOURNAL OF SYSTEMATIC BACTERIOLOGY, 1996, 46 (01) :128-148
[7]  
Bernardet JF, 2002, INT J SYST EVOL MICR, V52, P1049, DOI [10.1099/ijs.0.02136-0, 10.1099/00207713-52-3-1049]
[8]   Description of Cellulophaga algicola sp nov., isolated from the surfaces of Antarctic algae, and reclassification of Cytophaga uliginosa (ZoBell and Upham 1944) Reichenbach 1989 as Cellulophaga uliginosa comb. nov. [J].
Bowman, JP .
INTERNATIONAL JOURNAL OF SYSTEMATIC AND EVOLUTIONARY MICROBIOLOGY, 2000, 50 :1861-1868
[9]  
Breznak JA, 2007, Methods for General and Molecular Bacteriology, P309
[10]   Discrimination of members of the family Pasteurellaceae based on polyamine patterns [J].
Busse, HJ ;
Bunka, S ;
Hensel, A ;
Lubitz, W .
INTERNATIONAL JOURNAL OF SYSTEMATIC BACTERIOLOGY, 1997, 47 (03) :698-708