A Systematic Benchmarking of Computational Vibrational Spectroscopy With DFTB3: Normal Mode Analysis and Fast Fourier Transform Dipole Autocorrelation Function

被引:8
作者
Inakollu, V. S. Sandeep [1 ,2 ]
Yu, Haibo [1 ,2 ,3 ]
机构
[1] Univ Wollongong, Sch Chem & Mol Biosci, Wollongong, NSW 2522, Australia
[2] Univ Wollongong, Mol Horizons, Wollongong, NSW 2522, Australia
[3] Illawarra Hlth & Med Res Inst, Wollongong, NSW 2522, Australia
基金
澳大利亚研究理事会;
关键词
computational vibrational spectroscopy; DFTB3; normal mode analysis; dipole autocorrelation function; molecular dynamics simulations; TIME-CORRELATION-FUNCTIONS; TIGHT-BINDING METHOD; POLYMER MOLECULAR-DYNAMICS; INTERMOLECULAR PROTON BOND; RAMAN-SPECTRA; LIQUID WATER; AMINO-ACIDS; GAS-PHASE; INFRARED-SPECTROSCOPY; ATOMIC FLUCTUATIONS;
D O I
10.1002/jcc.25390
中图分类号
O6 [化学];
学科分类号
0703 ;
摘要
Computational vibrational spectroscopy serves as an important tool in the interpretation of experimental infrared (IR) spectra. In this article, we present a systematic benchmarking study of DFTB3 with two different computational vibrational spectroscopic methods, based on either normal mode analysis (NMA) or fast Fourier transform dipole autocorrelation function (FT-DAC). The results were compared with experimental data and theoretical calculations with B3LYP/cc-pVTZ. The empirical scaling factors for DFTB3/NMA, DFTB3-freq/NMA, and DFTB3/FT-DAC methods are 0.9993, 1.0059, and 0.9982, respectively. We also demonstrate the significance of anharmonicity and conformational sampling in vibrational spectroscopic calculations on flexible molecules. As expected, DFTB3/FT-DAC predicted the anharmonic vibrational peaks more accurately than DFTB3/NMA and NMA spectra are highly dependent on the initial structures. The potential limitations of DFTB3 for vibrational spectroscopic calculations and the challenges in assigning the FT-DAC spectral peaks were noted. DFTB3/FT-DAC is expected to serve as a promising technique in computational spectroscopy in complex biomolecular systems. (C) 2018 Wiley Periodicals, Inc.
引用
收藏
页码:2067 / 2078
页数:12
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