CRISPR/Cas System and Factors Affecting Its Precision and Efficiency

被引:46
作者
Javaid, Nasir [1 ]
Choi, Sangdun [1 ,2 ]
机构
[1] Ajou Univ, Dept Mol Sci & Technol, Suwon, South Korea
[2] Ajou Univ, S&K Therapeut, Campus Plaza, Suwon, South Korea
基金
新加坡国家研究基金会;
关键词
CRISPR; cas system; classification; host DNA repair; genome-editing efficiency; epigenome; HOMOLOGY-DIRECTED REPAIR; EMBRYONIC STEM-CELLS; GENOME-WIDE ANALYSIS; STRAND BREAK REPAIR; IN-VIVO; TARGETED MUTAGENESIS; GENE-EXPRESSION; GUIDE RNA; CRISPR-CAS9; NUCLEASES; CRYSTAL-STRUCTURE;
D O I
10.3389/fcell.2021.761709
中图分类号
Q2 [细胞生物学];
学科分类号
071009 ; 090102 ;
摘要
The diverse applications of genetically modified cells and organisms require more precise and efficient genome-editing tool such as clustered regularly interspaced short palindromic repeats/CRISPR-associated protein (CRISPR/Cas). The CRISPR/Cas system was originally discovered in bacteria as a part of adaptive-immune system with multiple types. Its engineered versions involve multiple host DNA-repair pathways in order to perform genome editing in host cells. However, it is still challenging to get maximum genome-editing efficiency with fewer or no off-targets. Here, we focused on factors affecting the genome-editing efficiency and precision of CRISPR/Cas system along with its defense-mechanism, orthologues, and applications.
引用
收藏
页数:25
相关论文
共 312 条
[91]   Essential Features and Rational Design of CRISPR RNAs that Function with the Cas RAMP Module Complex to Cleave RNAs [J].
Hale, Caryn R. ;
Majumdar, Sonali ;
Elmore, Joshua ;
Pfister, Neil ;
Compton, Mark ;
Olson, Sara ;
Resch, Alissa M. ;
Glover, Claiborne V. C., III ;
Graveley, Brenton R. ;
Terns, Rebecca M. ;
Terns, Michael P. .
MOLECULAR CELL, 2012, 45 (03) :292-302
[92]   RNA-Guided RNA Cleavage by a CRISPR RNA-Cas Protein Complex [J].
Hale, Caryn R. ;
Zhao, Peng ;
Olson, Sara ;
Duff, Michael O. ;
Graveley, Brenton R. ;
Wells, Lance ;
Terns, Rebecca M. ;
Terns, Michael P. .
CELL, 2009, 139 (05) :945-956
[93]   High-Resolution CRISPR Screens Reveal Fitness Genes and Genotype-Specific Cancer Liabilities [J].
Hart, Traver ;
Chandrashekhar, Megha ;
Aregger, Michael ;
Steinhart, Zachary ;
Brown, Kevin R. ;
MacLeod, Graham ;
Mis, Monika ;
Zimmermann, Michal ;
Fradet-Turcotte, Amelie ;
Sun, Song ;
Mero, Patricia ;
Dirks, Peter ;
Sidhu, Sachdev ;
Roth, Frederick P. ;
Rissland, Olivia S. ;
Durocher, Daniel ;
Angers, Stephane ;
Moffat, Jason .
CELL, 2015, 163 (06) :1515-1526
[94]   Treatment of Leber Congenital Amaurosis Due to RPE65 Mutations by Ocular Subretinal Injection of Adeno-Associated Virus Gene Vector: Short-Term Results of a Phase I Trial [J].
Hauswirth, William W. ;
Aleman, Tomas S. ;
Kaushal, Shalesh ;
Cideciyan, Artur V. ;
Schwartz, Sharon B. ;
Wang, Lili ;
Conlon, Thomas J. ;
Boye, Sanford L. ;
Flotte, Terence R. ;
Byrne, Barry J. ;
Jacobson, Samuel G. .
HUMAN GENE THERAPY, 2008, 19 (10) :979-990
[95]   Re-engineered RNA-Guided FokI-Nucleases for Improved Genome Editing in Human Cells [J].
Havlicek, Steven ;
Shen, Yang ;
Alpagu, Yunus ;
Bruntraeger, Michaela B. ;
Zufir, Nurdiana B. M. ;
Phuah, Zhi Yi ;
Fu, Zhiyan ;
Dunn, Norris R. ;
Stanton, Lawrence W. .
MOLECULAR THERAPY, 2017, 25 (02) :342-355
[96]   Stepwise recruitment of components of the preinitiation complex by upstream activators in vivo [J].
He, S ;
Weintraub, SJ .
MOLECULAR AND CELLULAR BIOLOGY, 1998, 18 (05) :2876-2883
[97]   Generation of mouse models of myeloid malignancy with combinatorial genetic lesions using CRISPR-Cas9 genome editing [J].
Heck, Dirk ;
Kowalczyk, Monika S. ;
Yudovich, David ;
Belizaire, Roger ;
Puram, Rishi V. ;
McConkey, Marie E. ;
Thielke, Anne ;
Aster, Jon C. ;
Regev, Aviv ;
Ebert, Benjamin L. .
NATURE BIOTECHNOLOGY, 2014, 32 (09) :941-946
[98]   Chemically modified guide RNAs enhance CRISPR-Cas genome editing in human primary cells [J].
Hendel, Ayal ;
Bak, Rasmus O. ;
Clark, Joseph T. ;
Kennedy, Andrew B. ;
Ryan, Daniel E. ;
Roy, Subhadeep ;
Steinfeld, Israel ;
Lunstad, Benjamin D. ;
Kaiser, Robert J. ;
Wilkens, Alec B. ;
Bacchetta, Rosa ;
Tsalenko, Anya ;
Dellinger, Douglas ;
Bruhn, Laurakay ;
Porteus, Matthew H. .
NATURE BIOTECHNOLOGY, 2015, 33 (09) :985-U232
[99]   Epigenome editing by a CRISPR-Cas9-based acetyltransferase activates genes from promoters and enhancers [J].
Hilton, Isaac B. ;
D'Ippolito, Anthony M. ;
Vockley, Christopher M. ;
Thakore, Pratiksha I. ;
Crawford, Gregory E. ;
Reddy, Timothy E. ;
Gersbach, Charles A. .
NATURE BIOTECHNOLOGY, 2015, 33 (05) :510-U225
[100]   Nucleosomes Inhibit Cas9 Endonuclease Activity in Vitro [J].
Hinz, John M. ;
Laughery, Marian F. ;
Wyrick, John J. .
BIOCHEMISTRY, 2015, 54 (48) :7063-7066