Accelerating the computation of bath spectral densities with super-resolution

被引:3
作者
Markovich, Thomas [1 ]
Blau, Samuel M. [1 ]
Parkhill, John [2 ]
Kreisbeck, Christoph [1 ]
Sanders, Jacob N. [1 ]
Andrade, Xavier [1 ]
Aspuru-Guzik, Alan [1 ]
机构
[1] Harvard Univ, Dept Chem & Chem Biol, Cambridge, MA 02138 USA
[2] Univ Notre Dame, Dept Chem, South Bend, IN 46556 USA
基金
美国国家科学基金会;
关键词
Spectral densities; Super-resolution; Hierarchical equations of motion; ELECTRONIC-ENERGY TRANSFER; EXCITATION TRANSFER; FMO COMPLEX; FORCE-FIELD; RECONSTRUCTION; SYSTEM; ALGORITHMS; COHERENCE; DYNAMICS; IMAGE;
D O I
10.1007/s00214-016-1954-1
中图分类号
O64 [物理化学(理论化学)、化学物理学];
学科分类号
070304 ; 081704 ;
摘要
Quantum transport and other phenomena are typically modeled by coupling the system of interest to an environment, or bath, held at thermal equilibrium. Realistic bath models are at least as challenging to construct as models for the quantum systems themselves, since they must incorporate many degrees of freedom that interact with the system on a wide range of timescales. Owing to computational limitations, the environment is often modeled with simple functional forms, with a few parameters fit to experiment to yield semi-quantitative results. Growing computational resources have enabled the construction of more realistic bath models from molecular dynamics (MD) simulations. In this paper, we develop a numerical technique to construct these atomistic bath models with better accuracy and decreased cost. We apply a novel signal processing technique, known as super-resolution, combined with a dictionary of physically motivated bath modes to derive spectral densities from MD simulations. Our approach reduces the required simulation time and provides a more accurate spectral density than can be obtained via standard Fourier transform methods. Moreover, the spectral density is provided as a convenient closed-form expression which yields an analytic time-dependent bath kernel. Exciton dynamics of the Fenna-Matthews-Olson light-harvesting complex are simulated with a second-order time-convolutionless master equation, and spectral densities constructed via super-resolution are shown to reproduce the dynamics using only a quarter of the amount of MD data.
引用
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页数:8
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