The complete mitochondrial genome of Pristurus rupestris rupestris

被引：2

作者：

Tarroso, Pedro ^{[1
,2
]}

Simo-Riudalbas, Marc ^{[2
]}

Carranza, Salvador ^{[2
]}

机构：

[1] Univ Porto, Ctr Invest Biodiversidade & Recursos Genet, Lab Associado, CIBIO InBio, Vairao, Portugal

[2] Univ Pompeu Fabra, CSIC, Inst Evolutionary Biol, Barcelona, Spain

来源：

MITOCHONDRIAL DNA PART B-RESOURCES | 2017年 / 2卷 / 02期

关键词：

Pristurus rupestris; Sphaerodactylidae; mitogenome;

D O I：

10.1080/23802359.2017.1398612

中图分类号：

Q3 [遗传学];

学科分类号：

071007 ; 090102 ;

摘要：

Pristurus rupestris rupestris is a gecko of the family Sphaerodactylidae adapted to the arid habitat found in the Hajar Mountains of southeastern Arabia. The complete mitochondrial genome was obtained with Illumina sequencing. The sequenced mitogenome has 13 protein-coding genes, 22 tRNAs, two rRNA genes and two non-coding regions, totalling 16,993 bp. The AT content of the obtained sequence is 52.1% (A:28.7%, T:23.4%, G:14.7%, C:33.2%). The control region has an AT content of 54.3% and a length of 1558 bp.

引用

收藏

页码：802 / 803

页数：2

相关论文

共 8 条

[1] MARS: improving multiple circular sequence alignment using refined sequences [J].

Ayad, Lorraine A. K. ;

Pissis, Solon P. .

BMC GENOMICS, 2017, 18

[2] Phylogenetic relationships of Semaphore geckos (Squamata: Sphaerodactylidae: Pristurus) with an assessment of the taxonomy of Pristurus rupestris [J].

Badiane, Arnaud ;

Garcia-Porta, Joan ;

Cervenka, Jan ;

Kratochvil, Lukas ;

Sindaco, Roberto ;

Robinson, Michael D. ;

Morales, Hernan ;

Mazuch, Tomas ;

Price, Thomas ;

Amat, Felix ;

Shobrak, Mohammed Y. ;

Wilms, Thomas ;

Simo-Riudalbas, Marc ;

Ahmadzadeh, Faraham ;

Papenfuss, Theodore J. ;

Cluchier, Alexandre ;

Viglione, Julien ;

Carranza, Salvador .

ZOOTAXA, 2014, 3835 (01) :33-58

[3] MITOS: Improved de novo metazoan mitochondrial genome annotation [J].

Bernt, Matthias ;

Donath, Alexander ;

Juehling, Frank ;

Externbrink, Fabian ;

Florentz, Catherine ;

Fritzsch, Guido ;

Puetz, Joern ;

Middendorf, Martin ;

Stadler, Peter F. .

MOLECULAR PHYLOGENETICS AND EVOLUTION, 2013, 69 (02) :313-319

[4] Trimmomatic: a flexible trimmer for Illumina sequence data [J].

Bolger, Anthony M. ;

Lohse, Marc ;

Usadel, Bjoern .

BIOINFORMATICS, 2014, 30 (15) :2114-2120

[5] Diversification in arid mountains: biogeography and cryptic diversity of Pristurus rupestris rupestris in Arabia [J].

Garcia-Porta, Joan ;

Simo-Riudalbas, Marc ;

Robinson, Michael ;

Carranza, Salvador .

JOURNAL OF BIOGEOGRAPHY, 2017, 44 (08) :1694-1704

[6] Reconstructing mitochondrial genomes directly from genomic next-generation sequencing reads-a baiting and iterative mapping approach [J].

Hahn, Christoph ;

Bachmann, Lutz ;

Chevreux, Bastien .

NUCLEIC ACIDS RESEARCH, 2013, 41 (13) :e129

[7] MAFFT Multiple Sequence Alignment Software Version 7: Improvements in Performance and Usability [J].

Katoh, Kazutaka ;

Standley, Daron M. .

MOLECULAR BIOLOGY AND EVOLUTION, 2013, 30 (04) :772-780

[8] Unipro UGENE: a unified bioinformatics toolkit [J].

Okonechnikov, Konstantin ;

Golosova, Olga ;

Fursov, Mikhail .

BIOINFORMATICS, 2012, 28 (08) :1166-1167